Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0280 ATGTTGGAGTCACCACCTTATGGCCAAAGCTTCAAGGTGTATCACCTTACTCTTACAAAACAGAAGCGTCCCCGTCGTTATTCTCTTGCTATGTCCCGAAGCTATAGAACTTCTATTTGCGTGTTTTGTtcagataataataacaagcaaATGCCGCTACTATCACGTGGTGATAGTCACAGGATGAGTTTTCAAACACGTGTGTCGGAAAGTTCCTTAGCAAGCAAAGGTTTCTTTGTTCCATCGTGTTCTAGTTCGAAAGGATTCCATTTCTCTAAGTATAGGCCATTAAATTGGGAACGGCTGAAGTCACGTGCAGCACATGATGTTGCTGGTGCTCATGAAGTCATCAATGATTTAGGATTGGACACTCTTACTTTCTTGGCTGTGACTGTCTTAATCGTGCCGacatttaagttaattaaagcCAGTCCTATACTTGGTTTCTTCTTTGCTGGGGTGGTACTCAATCAGTTTGATTTAATTAGAAACCTTACAGATGTTAAAGTTTTGTCTGAATGGGGGATCCTTTTCATGcTGTTTGAGATGGGTTTAGAGCTGTCActtgcaagtctaaaagctcttGCAAAATTTGCCTTTGGGATGGGATTGAGTCAGGTTGTGTTATCTACTTTAGCATTTACTGCTTTTGAACTTCCACCAAATGGGGCTATTGGAACAAAAGTTTTGGAAATCCTTTTCCACTCAAGGCCTGATCTGGTGAATATTAGAAGCGTTGATGAAGCTGTGATTATTGCTGCTGCTTTCTCTCTGTCATCTTCTGCATTTGTTCTACAGCTTCTTGCAGAGAAAGGTGAGCTTCCTACAAGATTTGGTTCAGCAACTCTGGGAATACTTCTTTTGCAGGACATTGCTGTTGTCCCACTTCTAGTCATTCTTCCAATACTAGAGAGCCAGaaTCTGGCTAAGGAAAATATTTGGCCAATGCTTGCTCAAGAGAGTTTAAAGGCATTAGGAGGATTGGGTCTACTTTCTCTTGGGGGAAAATACATTCTTAGGAGAGTTTTTGAGGTTGTTGCAGATGCAAGGAGCTCAGAGGCTTTTGTTGCACTTTGCTTGCTGACTATTGCTGGAACTTCACTTGTCACACAGAAATTGGGCTTTAGTGATACACTTGGAGCATTTTTAGCTGGGGCACTTCTAGCAGAGACAAATTTCAGGACCCAGATTGAAGCTGACATAAGACCATTTAGAGGCTTGCTTCTTGGGTTATTTTTTCTAACTACAGGGACTTCCATTGACATGCAGCTCCTTTTGCAAGAGTGGCCAAGTGTGTTTTCACTCTTGGCAGGTTTAATTGCTATCAAGACATTGATCATAACTTTAATTGGTCCTTGCTTTGGGCTTACTTTACAAGAAAGTGTACGAATAGGATTGCTTCTATCCCAGGGAGGTGAATTTGGATTTGTAGTTTTCTCCTTAGCAAATAGCAGGCTTGGGGTGCTTCCACTTGAGCTTAACAAGTTGCtcataattgttgttgtatTGTCAATGGCATTAACCCCATTTCTTAACGAAGCAGGAGGAAGGGTTGCTGGTTTTATTGACAACAAATTTGATGCTGAGATTAAAGCTCCTGAGATGGTCAACTTTAGTGCCAGTGAACCTGTAGTTATTATTGGATTTGGACAAATTGGCCAGGTTGATcaatcaatatattataatacctGTCATTTATATTGTCTATATGctaaattttctcttgtttctGATTTGAAGGTCCTTGCCAATTTCCTGTCTAATCCTATGGTTTCTGGAGAAGATAGTGACGTGCTAAGATGGCCTTATGTGGCTTTTGATCTTGATCCCATTGTGGTAAAGGCTGCTACAAAAGTTGGTTTTCCAGTTCACTATGGGGATGGATCATGTCCAGCTGTTCTTCAGTCTGCAGGTATCTCTTCTCCGAAAGCTATCATGGTTATGTACACTGGCAAAAGGACAGTTGAAGATGTTCAGAGGCTACGATTCACTTTCCCTGCAATACCAATCTATGCCAGAGCTAAAAATTTTGAGCATCTTTTAGAACTGAAGAAAGCAGGTGCAACAGATGCCATTTTGGAAAATGCAGAGACCAGCTTACTGCTGGGTTCTAAGCTTCTGAAAGGTCTTGGCATGATGTCTGATGATGTAGCATTGTTGAGTCAGAGCATTAGAGATTCCATGGAGCTACAAGTTCAAGAAGCGGTCAGCCACTCTGAATACCATGAAGTAGATATGATGAAGCCACTTCAGGTGAGAGTTGATGACTTGGCTGAGGCACGTATACCTATGAAAACAACTTCACTAGAATCTGAATTATCAGAATCGAACCAGACAGATCAAGTTTGGGTCCCTAGAATTCAGGTGGAAGTAGAACAAGATTTTGAACTCAATCAAGATGTGAATTTTGAAGGAAATGGTGCGTTATGTTGGAAACAAGTTACTGAAGAAAGATCAATTGTCGGATCTGAAGATGCTCTAGGAGAGGATCTAGTGGACTCATCGATCCCTTGTAATATTGCCACTGAGGAACCCTGA 2538 0.398 MLESPPYGQSFKVYHLTLTKQKRPRRYSLAMSRSYRTSICVFCSDNNNKQMPLLSRGDSHRMSFQTRVSESSLASKGFFVPSCSSSKGFHFSKYRPLNWERLKSRAAHDVAGAHEVINDLGLDTLTFLAVTVLIVPTFKLIKASPILGFFFAGVVLNQFDLIRNLTDVKVLSEWGILFMLFEMGLELSLASLKALAKFAFGMGLSQVVLSTLAFTAFELPPNGAIGTKVLEILFHSRPDLVNIRSVDEAVIIAAAFSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPILESQNLAKENIWPMLAQESLKALGGLGLLSLGGKYILRRVFEVVADARSSEAFVALCLLTIAGTSLVTQKLGFSDTLGAFLAGALLAETNFRTQIEADIRPFRGLLLGLFFLTTGTSIDMQLLLQEWPSVFSLLAGLIAIKTLIITLIGPCFGLTLQESVRIGLLLSQGGEFGFVVFSLANSRLGVLPLELNKLLIIVVVLSMALTPFLNEAGGRVAGFIDNKFDAEIKAPEMVNFSASEPVVIIGFGQIGQVDQSIYYNTCHLYCLYAKFSLVSDLKVLANFLSNPMVSGEDSDVLRWPYVAFDLDPIVVKAATKVGFPVHYGDGSCPAVLQSAGISSPKAIMVMYTGKRTVEDVQRLRFTFPAIPIYARAKNFEHLLELKKAGATDAILENAETSLLLGSKLLKGLGMMSDDVALLSQSIRDSMELQVQEAVSHSEYHEVDMMKPLQVRVDDLAEARIPMKTTSLESELSESNQTDQVWVPRIQVEVEQDFELNQDVNFEGNGALCWKQVTEERSIVGSEDALGEDLVDSSIPCNIATEEP 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0280 845 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 601 706 IPR036291 -
Ssu1g0280 845 Gene3D - 543 738 - -
Ssu1g0280 845 Gene3D - 119 516 IPR038770 -
Ssu1g0280 845 ProSiteProfiles RCK N-terminal domain profile. 569 700 IPR003148 GO:0006813
Ssu1g0280 845 Pfam TrkA-N domain 601 692 IPR003148 GO:0006813
Ssu1g0280 845 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 61 556 - -
Ssu1g0280 845 Pfam Sodium/hydrogen exchanger family 126 512 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Ssu1g0280 845 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 580 765 - -
Ssu1g0280 845 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 580 765 - -
Ssu1g0280 845 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 61 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0280 Ssu-Chr1 6679012 6693964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0280 24 757 Inorganic Solute Cotransporters AT4G04850 68.478 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0280 - - aprc:113858933 1074.69