Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0274 ATGGAGAACTATTCATACCCATCGTACCCAGATTCAGGGGAGTCCTCTCCGCGTGCAAGAGAGATCGACTTCGAGAACCCTCCCCCGTGGGACGACCAACAGCAAAACTACAAAGCCAAGTTCATGTGCAGCTACGGCGGCAAGATCCAGCCGCGCTCCCACGATAACCAGCTCTCCTACGTCGGCGGCGAGACCAAGATCCTCGCCGTCGACCGCACCACCAAGTTCCCCGCCATGCTCGCCAAGCTCTCCGCCCTCTGCGACGCCACGCCCCAAGACAACCTCACCTTCAGGTACCAACTCCCCGGCGAAGAGCTCGACGCCCTCATCTCCGTCACCAACGAAGACGACCTCGACCACATGATGCACGAGTACGATCGCCTCTACCGCCCTTCCGCTAGACCCGCCCGCATGCGATTATTCCTCTTTCTCTCCGATACTGCCTCTCCTGCTCCCGCCTCTGCTCCCCCCGACCCGGTCAAACCGAACAACGTCGATTTTCTCTTCGGCATCGACAAAAACGTCGCCGTCGCTGCTCCGCCGTCCGCGCCGGTGAAATTTCATGATCCCGtaccgccgccgccgccgccggaGTACCAGTCGCGGTTGAATTTGAACCCCACCGATCGGGTCGCAGTTTCGGATCCGAACGCGGTTCAGCGCCAGCTGCAGCAGTTGCAAATTGCGGACAGCGAGCAAGGTGCGTATCGGAGGAAGAGCGAAGAGAATTACGCCGCCGGTGATTATTACTTTCAGAAGGTGCCGGAGAAGTTCCCGCCGGCGAATTTTCCAGCGAGCTCGCCGGGGTATTGGTCGGAAAAGCATGTTTCCGGCGGGGTTTATCCGCCGGCGGTGTCGGCTGCGTCCGGCGGAGGGGATGCGCCGGTGTACATGATTCCGGCGCCGGGGACGTTCTATCATGCGCCGGTGGTGCGGCCTCCGGCCACGCAGGGGTACTACGCGGTGCAGCGAATGGCTTCTGATGGTTACCGTGAGGCGCCGGTGTACGGCGGCGTGCCGCCGCCAAAAGCGGCGGTTCCGGCGAGCTTGGCGGCGGCGCAGACGGTTAAGGCTCCCGCGTATACGGAAGGGTTCGGTGTGGTTCGGTCAGGTGGAATACCGGACAGTACGGGTGCGCCGTACGCACAGGTGGCGTACGATAGTGCAAGTGGGAGACAGGTTTACTATACTGCGCCGGGCGGCGTAGTGCACGCTCCTCCGTACCAAGGGGTTTTTCCGTCCGTCACCGCGGATATGAGACCGGGTGGGGTTTCGTTGGGTCAGGATGTTAAAGTGATAAGCAAGGTTACTCAAGGTTCAGTGTGA 1326 0.5988 MENYSYPSYPDSGESSPRAREIDFENPPPWDDQQQNYKAKFMCSYGGKIQPRSHDNQLSYVGGETKILAVDRTTKFPAMLAKLSALCDATPQDNLTFRYQLPGEELDALISVTNEDDLDHMMHEYDRLYRPSARPARMRLFLFLSDTASPAPASAPPDPVKPNNVDFLFGIDKNVAVAAPPSAPVKFHDPVPPPPPPEYQSRLNLNPTDRVAVSDPNAVQRQLQQLQIADSEQGAYRRKSEENYAAGDYYFQKVPEKFPPANFPASSPGYWSEKHVSGGVYPPAVSAASGGGDAPVYMIPAPGTFYHAPVVRPPATQGYYAVQRMASDGYREAPVYGGVPPPKAAVPASLAAAQTVKAPAYTEGFGVVRSGGIPDSTGAPYAQVAYDSASGRQVYYTAPGGVVHAPPYQGVFPSVTADMRPGGVSLGQDVKVISKVTQGSV 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0274 441 PANTHER OS05G0427100 PROTEIN-RELATED 1 434 - -
Ssu1g0274 441 SUPERFAMILY CAD & PB1 domains 54 148 - -
Ssu1g0274 441 SMART PB1_new 53 145 IPR000270 GO:0005515
Ssu1g0274 441 Gene3D - 59 145 - -
Ssu1g0274 441 MobiDBLite consensus disorder prediction 1 33 - -
Ssu1g0274 441 CDD PB1_UP2 42 143 - -
Ssu1g0274 441 Pfam PB1 domain 54 143 IPR000270 GO:0005515
Ssu1g0274 441 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN PROTEIN 1 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0274 Ssu-Chr1 6599124 6600449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0274 37 143 MAP Kinase Kinase Kinase AT5G57610 42.991 4.57e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0274 - - gmx:100780332 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1848 5 54923278 54924459 Ssu1g0274 1 6599124 6600449 PCT