Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0262 ATGGGGAGAGGCAAGATTGCGATTCGAAGGATCGACAACTCCACTAGCCGGCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCTAGAGAATTATCAATTCTTTGTGATGCTGAAGTTGGATTGATGGTCTTCTCCAGCACTGGCAAGCTTTATGACTACGCAAGCACAAGTATGAAATCGGTTATTGAGCGCTACAACAAGCTAAAAGAGGAACATCATCACCTCATGAATCCTGCTTCAGAAGAGAAGTTTTGGCAGACAGAAGCAGCAACCTTGAGGCAACAGCTGCAGTACTTGCAAGAATGCCacagGCAATTGATGGGTGAAGAACTTTCGGGTTTGGGTATTAAAGAACTTCAAAATCTGGAAAACCAACTGGAGATAAGTTTAAAAGGTGTTCGCATGAAAAAGGATCAAATTTTCACTAATGAGATTAAAGAACTACGCCAAAAGGCAAATCTCATTCATCAAGAAAATGTCGAACTCTATCAAAAGATGGACCAgatccaaaaagaaaatgcaGAGCTACAGAAGAAGGTATACGAAGCAAGGAGTACAAATGAAGAAAATGTGGCAGCCAATCCTTCATACATGCTCAGAAATGGATATGATTTACATCCACCTATCAGTCTCCAGCTAAGTCAGCCACAAACTCAATACAGCGAACCACCAACCAAAGCAATGAAACTGGGATTGCAGCTGCATTAg 720 0.4014 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYASTSMKSVIERYNKLKEEHHHLMNPASEEKFWQTEAATLRQQLQYLQECHRQLMGEELSGLGIKELQNLENQLEISLKGVRMKKDQIFTNEIKELRQKANLIHQENVELYQKMDQIQKENAELQKKVYEARSTNEENVAANPSYMLRNGYDLHPPISLQLSQPQTQYSEPPTKAMKLGLQLH 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0262 239 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 238 - -
Ssu1g0262 239 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Ssu1g0262 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu1g0262 239 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu1g0262 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu1g0262 239 Coils Coil 149 190 - -
Ssu1g0262 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu1g0262 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu1g0262 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu1g0262 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu1g0262 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu1g0262 239 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu1g0262 239 Coils Coil 120 140 - -
Ssu1g0262 239 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Ssu1g0262 239 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Ssu1g0262 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0262 Ssu-Chr1 6100728 6121607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0262 1 239 MADS-box Gene Family AT2G14210 62.083 6.00e-93 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu1g0262 K-box 3.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0262 K09264 - gmx:100808145 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1855 5 55046044 55086359 Ssu1g0262 1 6100728 6121607 PCT