Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0259 ATGAATTCCAAAAGGGCACTGGACCCAGGAGGTTTTGCTACAATGAACTGGAAAGTGCAACAATTAAGTAAATTTGCACAGTCAGAGAAGCTTGGACAAGGTGATTTTGGTGGCGTGTATAAAGGTTTTCTGAAAGATTTAAACTCCTATGTTGCTATCAAGAGGATATCAAGGGAGTCTAAGCAGGGGGTTAAGGAATATGCAACTGAAGTTAGGATCATTAACCAATTGAGGCACAAGAATTTGGTACAACTCCTTGGTTGGTGCCATAGGAAAAATGATCTCCTTCTCATATATGAATTCATGCCAAATAGAAGCTTAGATTCCCATTTATATGGTCGGAAAGGCTTCTTGACATGGCCAGTAAGGTATAACATAGCTCTAGGCTTGGCTTCAGCGTTGCTATACCTGCAAGAAGAATGGGAACAATGTGTTCTTTATAGGGACATCAAATCAAGCAACATAATGTTGGATTCAAGTTTCAATGCTAAGCTTGGTGATTTTGGTTTAGCTAGGTTGGTGGATCATGAGAAAGGGTCACAAACCACACTTATAGCTGGACCAGGGGGCAAAGCTTATAAGGAATCAGACATATACAGCTTTGGGGTTGTTTTATTGGAGATAGCTAGTGGAAGAAAACCCATTGACCTAAAAGCCAAGGAGGGTCAAGTAACAATAGTTGAGTGGGTTTGGGAGCTCTATGGATTGGGAGAGCTACATAAAGTAGCAGACCCAAAGCTATGTGGAGCATTCGATGAGGAGCAAATGGAACGGTTAGTGGCTATAGGCCTTTGGTGTGCTCATCCAAATTACAGATTCAGGCCTTCTGTAATGCAAGTGATCCAAGTGCTTAAATTTGACGCTCAATTGCCAATTCTGCCAAAGTGCATGCCTGTGACAAACTAG 906 0.4172 MNSKRALDPGGFATMNWKVQQLSKFAQSEKLGQGDFGGVYKGFLKDLNSYVAIKRISRESKQGVKEYATEVRIINQLRHKNLVQLLGWCHRKNDLLLIYEFMPNRSLDSHLYGRKGFLTWPVRYNIALGLASALLYLQEEWEQCVLYRDIKSSNIMLDSSFNAKLGDFGLARLVDHEKGSQTTLIAGPGGKAYKESDIYSFGVVLLEIASGRKPIDLKAKEGQVTIVEWVWELYGLGELHKVADPKLCGAFDEEQMERLVAIGLWCAHPNYRFRPSVMQVIQVLKFDAQLPILPKCMPVTN 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0259 301 ProSiteProfiles Protein kinase domain profile. 25 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0259 301 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Ssu1g0259 301 SUPERFAMILY Protein kinase-like (PK-like) 14 287 IPR011009 -
Ssu1g0259 301 PANTHER L-TYPE LECTIN-DOMAIN RECEPTOR KINASE 16 300 - -
Ssu1g0259 301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Ssu1g0259 301 SMART serkin_6 25 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0259 301 Gene3D Transferase(Phosphotransferase) domain 1 102 300 - -
Ssu1g0259 301 PANTHER - 16 300 - -
Ssu1g0259 301 Pfam Protein kinase domain 26 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0259 301 Gene3D Phosphorylase Kinase; domain 1 16 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0259 Ssu-Chr1 6054843 6055777 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0259 23 299 Receptor kinase-like Gene Family AT5G10530 58.276 1.60e-114 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Ssu1g0259 Pkinase 1.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0259 - - gmx:100780181 459.914