Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0254 ATGGCCACATACCAATGCTGTATCTGTAAGTGTACTCATCTCCTTCCTTACTTGGTCATAACCATAGTGACTTTGTCTTTCTTGATCCCTCATGCGGCTCCATTAGACTTCATCTTTCAGCAGTTTCTCAACAAGGAAGGTACCTTGAATTTTGAAGGAGATGTTTATTATGACAAGGGATTCCTCCAACTCACCCAATATAAGAAAGACAGTGTTGGCAGGGTCACATACTACAAACTGCTGCATCTTTGGGACAGGGACTCAAGAAAACTCACAGACTTCACTTCCAATTTCTCCTTCATTATTAATCAACCAAACAAAACCCAAATTGGAGATGGCATCACATTCTTTCTTGCCAGGCCCAACTTTCCACTTCCTGTCCCACCAGATGGGTCTGGTATAGGCCTTGTGAGCCGTCAACAAATGGAAGATCCAAATTACCCAAATGAGCATCCATTTGTAGCAGTGGAGTTTGACACCTTTGGGAATCAATTTGATCCTCAATATGACCATGTAGGTATCGATATTAAAACCATCATGAGTCCTTTCACTGCTGAATGGTTTAGTATTAAGGATGGGAGAGTACATGATGCACAAATTAGCTACAATTCTAGCACATGCAATTTAAGTATCATCTTTACAGGATATAAAGATAATGTCACAGTGAAACAACACTACTCCAGTGTAGTAGATTTGAGAGAGGTCCTGCCGGATTGGGTTGAGTTTGGCTTCACTTCAGCAACAGGATTGTTATTTGAGATACATACACTTTGCTCGTGGTCTTTCAGCTCGAGTTTGGACTTGGAAGTGCACAACGATAAAAGTAAGACAGGGATGGTGATAGGTCTGAGCATTGGAGGAGGTGTTTTAATTGTTGGTATTGGATTAGCTTGGCTTCTGAtgttgaagaagaagagaagagacaAGGAAGATGACTTGGATCTTATTATGGACAGTGATTTTGAAAGAGGGACTGGACCTAAGAAGTTTTCTTATAATGAACTTGTTAGAGCAACTAACAACTTTTCAAATGAATTGAAGCTTGGAGAAGGAGGTTTTGGCGGAGTCTACAAAGGATTCATAAGAGAGTTAGGTGACTATGTTGCAATTAAAAGGGTGTCACGGGGATCAAGACAGGGTGTGAAAGAGTATGCCTCTGAAGTAAAGATCATTAGTAGATTGAGGCACAGGAATTTGGTGCAGCTCCTAGGATGTTGCCacatgaaaaatgattttttacttATCTATGAATTCATGTCAAATGGAAGCCTAGATTCCCATTTGTTTGGAGCCAAAAGCCTCCTAACCTGGGCAGCAAGATTTAACATTGCTGGAGGCCTAGCCTCAGCATTATTGTACCTGCATGAAGAGTGGGAGCAATGTGTACTCCATAGGGACATAAAATCAAGTAATGTTATGTTGGATGCAAATTTCAATGCAAAGCTTGGAGACTTTGGACTAGCCAGATTGGTGGATCATGGCACAGGGTCACAAACAACAGTTTTAGCTGGAACAATGGGGTATATGGCTCCTGAATCTGCCACCAGAGGCAAGGCTAGTAGAGAGTCTGATGTATACAGTTTCGGTGTTGCTGTTTTGGAGATAGCTTGTGGAAGAAAACCAATTGATCTAAGAGCCAGTGAGGAACAAATAGTTATGTTGGAATGGGTTTGGGAACTCTATGGCATGCGTAATCTGCTTGAAGCAGCTGATCCTAGATTGTGTGGAGACTTTGATGAGCAGGAAATGGAAAGGTTAATGATAGTTGGCCTATGGTGTGCTCACCCAGATTACTCTTTCAGGCCTACGATTAGGCAAGCAATGCATGTACTTAATTTTGAAGCTCCATTGCCCACTCTCCCATCAAAGATGCCTAAAGCCACCTACGTTGTTCCTTCAATTGCTGCATCTACATCTTCAAACTATCCATCATCTAGCGCCGATGCTTTTGGGCCTACTAAAACCGAGCCTTTATCAAATAGCTCTTACACTTGCTCCTCAGAATCCAAAACATCTGCTGCACTTCTGCATACAGTTGATATGTAA 2046 0.4106 MATYQCCICKCTHLLPYLVITIVTLSFLIPHAAPLDFIFQQFLNKEGTLNFEGDVYYDKGFLQLTQYKKDSVGRVTYYKLLHLWDRDSRKLTDFTSNFSFIINQPNKTQIGDGITFFLARPNFPLPVPPDGSGIGLVSRQQMEDPNYPNEHPFVAVEFDTFGNQFDPQYDHVGIDIKTIMSPFTAEWFSIKDGRVHDAQISYNSSTCNLSIIFTGYKDNVTVKQHYSSVVDLREVLPDWVEFGFTSATGLLFEIHTLCSWSFSSSLDLEVHNDKSKTGMVIGLSIGGGVLIVGIGLAWLLMLKKKRRDKEDDLDLIMDSDFERGTGPKKFSYNELVRATNNFSNELKLGEGGFGGVYKGFIRELGDYVAIKRVSRGSRQGVKEYASEVKIISRLRHRNLVQLLGCCHMKNDFLLIYEFMSNGSLDSHLFGAKSLLTWAARFNIAGGLASALLYLHEEWEQCVLHRDIKSSNVMLDANFNAKLGDFGLARLVDHGTGSQTTVLAGTMGYMAPESATRGKASRESDVYSFGVAVLEIACGRKPIDLRASEEQIVMLEWVWELYGMRNLLEAADPRLCGDFDEQEMERLMIVGLWCAHPDYSFRPTIRQAMHVLNFEAPLPTLPSKMPKATYVVPSIAASTSSNYPSSSADAFGPTKTEPLSNSSYTCSSESKTSAALLHTVDM 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0254 681 SUPERFAMILY Protein kinase-like (PK-like) 326 633 IPR011009 -
Ssu1g0254 681 ProSitePatterns Protein kinases ATP-binding region signature. 348 371 IPR017441 GO:0005524
Ssu1g0254 681 CDD STKc_IRAK 348 612 - -
Ssu1g0254 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Ssu1g0254 681 ProSiteProfiles Protein kinase domain profile. 342 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0254 681 SMART serkin_6 342 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0254 681 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
Ssu1g0254 681 PANTHER - 19 638 - -
Ssu1g0254 681 Gene3D - 34 283 - -
Ssu1g0254 681 Pfam Legume lectin domain 35 276 IPR001220 GO:0030246
Ssu1g0254 681 ProSitePatterns Legume lectins alpha-chain signature. 236 245 IPR000985 -
Ssu1g0254 681 PANTHER LECTIN RECEPTOR KINASE 19 638 - -
Ssu1g0254 681 Pfam Protein kinase domain 344 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0254 681 ProSitePatterns Legume lectins beta-chain signature. 154 160 IPR019825 -
Ssu1g0254 681 CDD lectin_legume_LecRK_Arcelin_ConA 35 266 IPR001220 GO:0030246
Ssu1g0254 681 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 267 IPR013320 -
Ssu1g0254 681 Gene3D Transferase(Phosphotransferase) domain 1 419 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0254 Ssu-Chr1 5934583 5936628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0254 20 629 Receptor kinase-like Gene Family AT5G10530 46.975 4.54e-180 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Ssu1g0254 Pkinase 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0254 - - cam:101491058 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1863 5 55239121 55240272 Ssu1g0254 1 5934583 5936628 PCT
Ssu1g0254 1 5934583 5936628 Ssu5g1860 5 55231377 55233080 PCT