Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0252 ATGACGGATGTTCAAAGCAGCACAGAATTGAATGAAACTGCACATATGCTTGCACCTCCCCCAGGCACTTTTGTAGATCGTGAAGAACTCATCCAACATGTTGGAGACTTTGCTGTGTCCCAGGGGTATGTGGTGACTATCAAGCAATCCAAGAGGGACAAAGTAGTTGTACTTGGCTGTGACAGAGGAGGTGTTTATCGTAACCGGCGAAAACCTGCTGAGGAGTCCTCAGTGGAACATAACCGTAAAAGAAAAACTGGTTCTCGTCTAACAAATTGTCCTTTTGAAGCTGTGGGCAAGAAGGAGGATGGTTTGTGGGTACTCACCATAAAAAATGGAACACACAATCATGAACCCTTAAAGGACATGTCAGAACATCCTTCTGCCCGTCGCTTCACAGAGAGAGAAGTTTTGCTCATTAAAGAAATGACAGAAGCTGGGTTGAAACCTCGACAAATTCTAAAGAGGCTGAGACAAAGCAATCCAGAACTTTTATCAACCCCAAAGCATGTTTATAATGTTAAAGCTAAGCTTAGACAAGGAAACACGAATGTTAGGAATTTCAAGTCACTGAGACCTGAGAAGTCTGCTGTGAGAAACAATTATCTCGCCGTAATTGAACCATTGTGGAGGCAGTGCAACCCTCCGAGGGTTCCCAATCTTATTGGAGGAAGATTTGTTGATTCACAGTCATGTGCATCAATTGACATTTTAAACCCTgcaAGCCAGCAAGTTGTTTCTCAGGTTCCAATGACTACAAACGAGGAGTTCAAAGCAGCAGTGTTTTCTGCAAAACGGGCCTTTTCATTGTGGCATAACACACCAGTTTCCACTCGACAGAGAATCATGTTTAAGTTCCAAGAGCTTATTGATAGAGACATtGATAAGATTGCTATGAATATCAGTACTGAACATGGAAAAACGCTGCGAGATGCACGTGATGGTGTGTTACGTGGACTAGAGGTTGTTGAACATGCTTGTGGTATGGGAAATGTGCTAAAGGGATATTTTGTTCCCGATGTGTACAATGGAATAGACACACACAGCATTAGAGAGTCACTTGGTGTTTGTGCTGATGTTTCCTATTGCTGTCACATGTGGCAATACATTCATTCTAAAGCCATCAGAGAAGAATCCAGGTTTTTACTCtactttttctcttatctttgtGGTGTCATTTGGAGGATTTCTTATCCTCTCCTATACTTTTGGGCATCTGTGATGCTGGCAGAGTTAGCAATTGAGGCTGGTTTACCTAATGGTGTGTTAAATATTGTTCATGGTACAAATGACATTGTCAATGCTATctgtgatgatgatgatataaaGGCTGTCTCCTTTGTTGGTTCAAATACAGTTGGTGCTTATGTATACGCGAGAGCATCTACTAAAGGTAAACGCGTGCAGTCCAATATTGGAGCCAAAAATCATGCTGTCATAATGCCAGATGCAAGAGTGGATGCTACTTTGAAAGCTTTGGTTACAGCTGGTTTTGGTGCTGCTGGACAGAAGTGCACAGCACTGAGTGCTGTTGTTTTTGTTGGAAGTTTCAGTCAATGGAAAGATAAACTAGTAGAGCATGCCAAATCACTTAAGGTCAATGCTGGAACAGAACCAGACACAGACCTTGGTCCTGTTATTAGCAAACAGGCAAAGGAACACACTTGCAGATTGATTCAAACAGGTGTGGAATCTGGTGCAAAACTAGTGCTTGATGGGAGAAATATTGTGGTTCCAGGATACAAACACGGAAACTTCATTGGTCCTACGATCTTGTCAGATGTCACAGTTGATATGAGATGCTACaagGAGGAGATTCTTGGCCCAGTTCTTCTGTGTATGGAGGTTGACAGCATACAAAAGGCCATAAACATCGTCAACAGCAACAAATATGGTAATGGAGCATCTATTTTTACAACTTCTAATGCGGCGGCAAGAAAATTCCAGACTGAGGTTGAAGTTGGACAGGTTGGCATAAATGTCCCAATCTCTGTTTCATTgccattttcttcatttattagcTCCAGGCCATCTTTTGTTGGTGATTTGAACTTTGATGGCAGAGCTGGAATTCAGTTTTACACACAGATTAAGATGGTCACTAAACAATGGACTGACTCATTAGATGGAGATGAAGCAACTCTTGAAATGCCTTTTGCTTAG 2163 0.4087 MTDVQSSTELNETAHMLAPPPGTFVDREELIQHVGDFAVSQGYVVTIKQSKRDKVVVLGCDRGGVYRNRRKPAEESSVEHNRKRKTGSRLTNCPFEAVGKKEDGLWVLTIKNGTHNHEPLKDMSEHPSARRFTEREVLLIKEMTEAGLKPRQILKRLRQSNPELLSTPKHVYNVKAKLRQGNTNVRNFKSLRPEKSAVRNNYLAVIEPLWRQCNPPRVPNLIGGRFVDSQSCASIDILNPASQQVVSQVPMTTNEEFKAAVFSAKRAFSLWHNTPVSTRQRIMFKFQELIDRDIDKIAMNISTEHGKTLRDARDGVLRGLEVVEHACGMGNVLKGYFVPDVYNGIDTHSIRESLGVCADVSYCCHMWQYIHSKAIREESRFLLYFFSYLCGVIWRISYPLLYFWASVMLAELAIEAGLPNGVLNIVHGTNDIVNAICDDDDIKAVSFVGSNTVGAYVYARASTKGKRVQSNIGAKNHAVIMPDARVDATLKALVTAGFGAAGQKCTALSAVVFVGSFSQWKDKLVEHAKSLKVNAGTEPDTDLGPVISKQAKEHTCRLIQTGVESGAKLVLDGRNIVVPGYKHGNFIGPTILSDVTVDMRCYKEEILGPVLLCMEVDSIQKAINIVNSNKYGNGASIFTTSNAAARKFQTEVEVGQVGINVPISVSLPFSSFISSRPSFVGDLNFDGRAGIQFYTQIKMVTKQWTDSLDGDEATLEMPFA 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0252 720 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 209 371 IPR016162 GO:0016491
Ssu1g0252 720 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 404 472 IPR016162 GO:0016491
Ssu1g0252 720 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g0252 720 Pfam Aldehyde dehydrogenase family 405 700 IPR015590 GO:0016491
Ssu1g0252 720 Pfam Aldehyde dehydrogenase family 226 359 IPR015590 GO:0016491
Ssu1g0252 720 SUPERFAMILY ALDH-like 208 706 IPR016161 GO:0016491
Ssu1g0252 720 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 3 717 IPR010061 GO:0004491
Ssu1g0252 720 MobiDBLite consensus disorder prediction 68 87 - -
Ssu1g0252 720 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 498 509 IPR016160 GO:0016491
Ssu1g0252 720 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 473 672 IPR016163 GO:0016620
Ssu1g0252 720 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 220 704 IPR010061 GO:0004491
Ssu1g0252 720 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE ISOFORM X1 3 717 - -
Ssu1g0252 720 MobiDBLite consensus disorder prediction 68 86 - -
Ssu1g0252 720 CDD ALDH_F6_MMSDH 218 704 IPR010061 GO:0004491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0252 Ssu-Chr1 5882634 5892637 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0252 187 703 Aldehyde Dehydrogenase Gene Family AT2G14170 61.197 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0252 K00140 - qsu:112015070 1062.75