Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0250 ATGGCAACTTCTCATTTATCAATACCTTCTGAGCTATTTTTACGACAACATGATCCCCCAGCAACACAAGAAGTTGTTTCAGAAGTTCCTTGCAGTACAGATGAAGAGTTTAAAGCAGCAGCGTCTGCAGCAAAAAAGGCATATCCATCATGGCGAAACACTCCAATCACGAAACGCCAACGAGTTATGTTGAAGTTCCAGGAGCTTATAGGCAGAGATATGGATAAACTTGCATTGAATGTGACCGCTGAACAAGGAAAGACATTAAAGGATGCACAAGGAGATGTGTTCCGTGGTTTAGAGGTGGTGGAACATGCTTGTGGGATGGCAACTCTACAAATGGGAGAATATGTTTCCAATGTATCACATGGAATTGATACTTACAGCATTAGAGAACCACTCGGTGTTTGTGCTGGTATTTGTCCATTCAACTTTCCTGCAATGATTCCCTTGTGGATGTTCCCAGTGGCAATTACCTGCGGCAATACCTTTATTCTAAAACTGTCAGAGAAAGATCCAGGTGTTTCTGTAATGCTTGCAGAATTGGCAATGGAAGCTGGTTTGCCTGAGGTTGTCTTAAATATAGTTCATGGAACCCATGATATTGTGAATGCTATTTGTGATGATGACGACATTAAAGCCATATCTTTTGTTGGTTCAAATATTGCAAGGATGCTTAATTATTTCCATCCTTTTGATAATTCTGGTGGGATTGTCCCCAGAATAGACTGTTTCAAGGAAAATAAACTTGTGGAGTGTGCAAAAGCTCTTAAAGTAAATGCTGGAACTGAACCTGATGCAGACCTTGGTCCAGTCATTAGCAAACAGGCAAAGGAGCGAATACACAGATTAATTCAATCTGGGGTTGAAAGTGGCGCCAAACTAGTGCTCGATGGAAGAAATATAGTGGTCCCAGGATATGAATCTGGCAATTTTATTGGCCCAACCATCTTACCAGATGTCACTGCCAACATGGAGTGCTACAAGTATTTGTTAACAACTACTCCATTTCATTTGTATTTGTTAAACTTCCATTTATCTCTTACGCTGACTTTTTACAACAGGTATCGAAATGGTGCTTCTATATTTACCACATCTGGTGTGGCTGCAAGAAAATTTCAGACTGAGATCGAGGCTGGGCAGGCAAGGCAGGGGTTAACTTTTATACACAGATCAAAACAGTAA 1185 0.4076 MATSHLSIPSELFLRQHDPPATQEVVSEVPCSTDEEFKAAASAAKKAYPSWRNTPITKRQRVMLKFQELIGRDMDKLALNVTAEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAITCGNTFILKLSEKDPGVSVMLAELAMEAGLPEVVLNIVHGTHDIVNAICDDDDIKAISFVGSNIARMLNYFHPFDNSGGIVPRIDCFKENKLVECAKALKVNAGTEPDADLGPVISKQAKERIHRLIQSGVESGAKLVLDGRNIVVPGYESGNFIGPTILPDVTANMECYKYLLTTTPFHLYLLNFHLSLTLTFYNRYRNGASIFTTSGVAARKFQTEIEAGQARQGLTFIHRSKQ 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0250 394 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 13 226 IPR016162 GO:0016491
Ssu1g0250 394 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 243 384 IPR016163 GO:0016620
Ssu1g0250 394 Pfam Aldehyde dehydrogenase family 248 381 IPR015590 GO:0016491
Ssu1g0250 394 Pfam Aldehyde dehydrogenase family 20 221 IPR015590 GO:0016491
Ssu1g0250 394 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 247 380 IPR010061 GO:0004491
Ssu1g0250 394 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 20 226 - -
Ssu1g0250 394 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 247 380 - -
Ssu1g0250 394 SUPERFAMILY ALDH-like 19 382 IPR016161 GO:0016491
Ssu1g0250 394 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 20 226 IPR010061 GO:0004491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0250 Ssu-Chr1 5872465 5878640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0250 20 381 Aldehyde Dehydrogenase Gene Family AT2G14170 65.848 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0250 K00140 - gmx:100783569 555.444