Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0234 ATGGTGAGAAAGAAGATACCGATCAAGAAGATCGACGACGTGACAGCGAGGCAGGTGACTTTCTCGAAGAGGAAGAGTGGTCTTATTAAGAAGGCACGCGAGCTCTCTGTTCTTTGTGATGCTGAGATAGCTCTCATGGTCTTTTCACCTGGTGGCAAGCTCTTCGAGTATGCTAGTACAAGTATGGAGAAGGTAACTGAAAGGTATATTTCACGGTCAGAGCTGACCCTTGACAAATTAGACCAGTCATGTGCTAAAGAGCagGTCAGATGTAATTATGCTGATTTGAACAAAGAATTCGGAGAGAGGACTCGTGAAATGAGACAACTAAATGGAGAAGAACTGCAAGGATTGACCCTAAAGGAACTACAGAAACTAGAAGATCGACTTGACTCATCCTTGAACTGTGTTTATAAAGCGAAGGCTAAAAATTTTATGAGAGAGATCGGTATTCTTAAGCAAAAGGGAAACAAACTCATGGAAGAAAACCGGCTGTTAAAACAGACAAAACCTAGGAAAGAAATATGTTTGGTTCAGAGACATGAGCATGAACAAGGCCAGTCTTTCGACACCAACCTCACATGGGGTAAGTTTCTTGAAGACGTGCAGCTGATTTTTTGTCCAGTTTTTTCAGATAGAGTAGATGaagtaaaagtgaaaaataattcataa 672 0.4018 MVRKKIPIKKIDDVTARQVTFSKRKSGLIKKARELSVLCDAEIALMVFSPGGKLFEYASTSMEKVTERYISRSELTLDKLDQSCAKEQVRCNYADLNKEFGERTREMRQLNGEELQGLTLKELQKLEDRLDSSLNCVYKAKAKNFMREIGILKQKGNKLMEENRLLKQTKPRKEICLVQRHEHEQGQSFDTNLTWGKFLEDVQLIFCPVFSDRVDEVKVKNNS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0234 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu1g0234 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu1g0234 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu1g0234 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu1g0234 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu1g0234 223 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Ssu1g0234 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 174 - -
Ssu1g0234 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu1g0234 223 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 174 - -
Ssu1g0234 223 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Ssu1g0234 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu1g0234 223 ProSiteProfiles K-box domain profile. 86 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu1g0234 223 Pfam K-box region 84 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu1g0234 223 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0234 Ssu-Chr1 5608012 5626770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0234 1 168 MADS-box Gene Family AT2G22540 50.588 4.10e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu1g0234 K-box 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0234 - - gmx:100818433 315.849