Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0233 ATGGCGAGAAAGAAGATACCGATCAAGAAGATCGACAACATAAACGCGAGGCAGGTAACTTTCTCGAAGAGGAGGAAAGGTCTTTTCAAGAAGGCTCAGGAGCTGTCAACTCTTTGTGATGCAGAGATTGCTCTCATAGTCTTTTCCGCCACTAGCAAGTTCTTTGAGTACGCCAGTTCAAGCATgcaacaaatacttgaaaggcGTAATCGGCATTCAGCGATTCAAGGATCAGACAATCCATCTATTGAGCAACAGCTTGGAAGTGACTCCTATGACATGCTGCGCATGGAAGTAGAAGATAAGACTCATGAACTGAGTTGGTTGAATGGGCAAGAGTTGCAAGGATTGACAATACAAGAATTGCAGAAACTGGAGGAAGTTCTTCAAAGACGTTGGACcactatttcaaaaataaaggatgaaaaaattatacaagaGATCGACCACCTTAAGACAAAGGAAGCCGAACTTATGGAAGAGAACCAGAAATTGAAACAGAGCTTCGTACTAGAACAAAGGCAATCATACGGGTCAATTACCTGCAGTTCATCTGATTTTCCTCCAGACTATGGTAGTTCTGACACATCTCTCAAGTTGGGGTTGTCTTTATTTGAATGA 621 0.3929 MARKKIPIKKIDNINARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSATSKFFEYASSSMQQILERRNRHSAIQGSDNPSIEQQLGSDSYDMLRMEVEDKTHELSWLNGQELQGLTIQELQKLEEVLQRRWTTISKIKDEKIIQEIDHLKTKEAELMEENQKLKQSFVLEQRQSYGSITCSSSDFPPDYGSSDTSLKLGLSLFE 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0233 206 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Ssu1g0233 206 PANTHER - 1 203 - -
Ssu1g0233 206 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Ssu1g0233 206 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu1g0233 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu1g0233 206 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu1g0233 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 203 - -
Ssu1g0233 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu1g0233 206 Coils Coil 148 168 - -
Ssu1g0233 206 Pfam K-box region 85 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu1g0233 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu1g0233 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu1g0233 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu1g0233 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu1g0233 206 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0233 Ssu-Chr1 5585690 5599084 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0233 1 202 MADS-box Gene Family AT2G22540 47.257 2.87e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu1g0233 K-box 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0233 - - gmx:100779453 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1890 5 55637135 55661231 Ssu1g0233 1 5585690 5599084 PCT