LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g0232	atgatGGTCTCTCCCACTTTCCTGAAAGAGGAATCTGTAATGTACAAAATGGTTTTCGGTCTTTATCTCGCGCTATATCCCTCATTTGCTCCCTTAACATATGAATGGACGACTGGTCATGCATATATCACCACCGTGTACGACAAAAGTGTAGTTCAGCATCCTGGTGTTCTGATTCTGGTGACTTTTTCCAAGAGGAAGAGAGGTCTTTTTAAGAAGGCACAGGAACTTTCTACACTTTGTGATGCCGAGATAGCTGTCACAGTCTTCTCTGCTGCTGGCAAGCTCTTCGAATACGCTAGCTCAagTGTTCAGCAAGTAATTAAAAGGTACAATCTCCATACAAGGATTGACAAATTACAACATCCATCTGTAGAGTTGCAGCTTGACAGCGACACCTACAACTACTTTGTTGCGATGCGCAATGAAGTGGCAGACAGGACTCATGAGCTGAGGAAGTTGAATGGGGAAGAGCTGCAAGGATTAAAAATTCGAGAATTACAGGAACTAGAGAAACTAATAACGAAAGGTTTGGCCCGTGTTTCAAAAGCAAAGGATGAAAGAATTGTTAAGGATAGCATTGAGCTCAAGAAAAAGGGAGTTGAACTAATGCAAAAGAACCAACAACTGAAACAGATAAGAAGTCTTGCAAATGATCAAGGGCAGTCATCTAAGTCAATCATGGTTAGCAGCCCGTCAAATCGTGCTAAAGATCACACTCATAATAAGGATGCTTCTCTCCTCTTGGGGTTAGTTCCGTGA	762	0.4186	MMVSPTFLKEESVMYKMVFGLYLALYPSFAPLTYEWTTGHAYITTVYDKSVVQHPGVLILVTFSKRKRGLFKKAQELSTLCDAEIAVTVFSAAGKLFEYASSSVQQVIKRYNLHTRIDKLQHPSVELQLDSDTYNYFVAMRNEVADRTHELRKLNGEELQGLKIRELQELEKLITKGLARVSKAKDERIVKDSIELKKKGVELMQKNQQLKQIRSLANDQGQSSKSIMVSSPSNRAKDHTHNKDASLLLGLVP	253

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g0232	253	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	61	249	-	-
	Ssu1g0232	253	SMART	madsneu2	36	102	IPR002100	GO:0003677\|GO:0046983
	Ssu1g0232	253	ProSiteProfiles	K-box domain profile.	130	222	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Ssu1g0232	253	Gene3D	-	60	123	IPR036879	GO:0003677\|GO:0046983
	Ssu1g0232	253	Coils	Coil	167	187	-	-
	Ssu1g0232	253	PANTHER	-	61	249	-	-
	Ssu1g0232	253	MobiDBLite	consensus disorder prediction	215	253	-	-
	Ssu1g0232	253	SUPERFAMILY	SRF-like	61	123	IPR036879	GO:0003677\|GO:0046983
	Ssu1g0232	253	Pfam	K-box region	139	212	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Ssu1g0232	253	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	61	99	IPR002100	GO:0003677\|GO:0046983
	Ssu1g0232	253	MobiDBLite	consensus disorder prediction	215	235	-	-
	Ssu1g0232	253	PRINTS	MADS domain signature	65	80	IPR002100	GO:0003677\|GO:0046983
	Ssu1g0232	253	PRINTS	MADS domain signature	80	101	IPR002100	GO:0003677\|GO:0046983
	Ssu1g0232	253	ProSiteProfiles	MADS-box domain profile.	61	103	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g0232	Ssu-Chr1	5518717	5531687	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g0232	61	251	MADS-box Gene Family	AT2G22540	43.694	2.03e-52	168

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Ssu1g0232		K-box	9.1e-10	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g0232	-		-	ahf:112786765	196.438