Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0225 ATGGGAGTGGAGAAGCAGTTGTTGAGGCCTGGCACCGGTCCCAAGCCACGTCCCGGTCAGAACGTCACCGTTCACTGCACTGGTTTCGGGAAGAACGGTGACCTTTCTCAGAAATTTTGGAGCACCAAGGATCCTGGCCAGAACCCTTTCGCATTCAAAATCGGCCAAGGTTCTGTTATCAAAGGATGGGATGAAGGTGTGATTAGCATGCAGGTTGGGGAAGTTGCTCGTCTCCGGTGCTCTCCTGATTATGCTTATGGTGCTGGTGGCTTTCCTGCTTGGGGAATACAGCCCAACTCTGTTTTGGAATTTGAAATCGAAGTCTTAAATGTGCAATGA 339 0.5044 MGVEKQLLRPGTGPKPRPGQNVTVHCTGFGKNGDLSQKFWSTKDPGQNPFAFKIGQGSVIKGWDEGVISMQVGEVARLRCSPDYAYGAGGFPAWGIQPNSVLEFEIEVLNVQ 112
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0225 112 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 14 109 IPR001179 GO:0003755
Ssu1g0225 112 SUPERFAMILY FKBP-like 2 111 - -
Ssu1g0225 112 Gene3D - 1 112 IPR046357 GO:0003755
Ssu1g0225 112 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 111 - -
Ssu1g0225 112 MobiDBLite consensus disorder prediction 1 22 - -
Ssu1g0225 112 PANTHER PEPTIDYLPROLYL ISOMERASE 1 111 - -
Ssu1g0225 112 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 19 112 IPR001179 GO:0003755
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu1g0225 Ssu-Chr1 5401933 5403610 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0225 3 110 Calmodulin-binding Proteins AT5G48570 33.333 8.12e-11 55.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0225 K01802 - gmx:100500283 224.557