Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0224 ATGGTGTGCCAAGCAGCAAGCCAAACAAGATTTCGGGCTTTGAAACATGAGAATGGCATTGAAGAGAAGCAGCAAGCCATTGAAGATCCCATATCAAGGCACCATAACATCTACTTGTATGCTCATTGGTCTTGGCCTTACCCACAGCATGTGGCTCGGCCATCACCTTACTTAAATTGCTCCTGCACCTCGGCAGAGCCCAGTTTGCAGATTCATTCAGCATGTATGAACCCTAGCACATGCATCCTTCCTGCTGTCAGCGTATTTCCAAGCTTCACAGCTCCTGCTATCCCAAACTTGAAGACTGAGCAGACCGATGAAGTGCAAGGATTCCTTCAGTATCCCAATTCAGAACCATGTTTGAAAGAAACACATACTGGAGGGGCTATACAAAATGCAAATCATGCATCTTTGCAGAAGAAGTTACTTATTTTTGACCACTCTGGTAGTAAGACAAGGTTGCTTTACAGTCCTGTCTTCCCTCTTGTCCAGAGTCCAACTGTTAGTGCTACACAATTTGCTCAAGTTTATGATGTAAACGAGGAAGCACAGGCAACTAATATGGGCCTAAAGCATATACCTGTATACACTTCACCAGAAGAGACTGGTAAGGATCATATTGACAATGATGAAAGCGAAATGCATGAAGACACAGAAGAAATCAATGCATTGCTTTAttctgatgatgatgatgatgaggtaACAAGTACAGGCCATTCTCCATTGGTTACTAAAAGAACTTATGTGACGCAAAAACAGTTTGCGGATATGAAGGAGGAGGTTGCTAGCTCTGATTGGCCAAACAAAAAGCAGAAGTTAATTGATGGTGGATACAATAGATTACCACCACTTGTGGACAGTGCTACTTCTGAAAGGCTAAATGAAACTTGCGAGTATGTCACCGATGCTGAATTGAAGTATTTTAGTAGTGGTGGGGTTTATGCTGCAAGGCAAACTAAAGAAGATAATTTAACAGCTGCTGATATTCAACTGAAAAAGGATAAAATCCGTGAATTGTTGAGAGTTCTTGAGAACTTTATTCCTGGAGCAAAAGGAAAGCATCCCCTGTTAGTCATCGATGGTACTATTGAGTACTTGAAATCTTTGATGTCCCAAACTGGTACCCTGAAATATCACTAA 1140 0.4088 MVCQAASQTRFRALKHENGIEEKQQAIEDPISRHHNIYLYAHWSWPYPQHVARPSPYLNCSCTSAEPSLQIHSACMNPSTCILPAVSVFPSFTAPAIPNLKTEQTDEVQGFLQYPNSEPCLKETHTGGAIQNANHASLQKKLLIFDHSGSKTRLLYSPVFPLVQSPTVSATQFAQVYDVNEEAQATNMGLKHIPVYTSPEETGKDHIDNDESEMHEDTEEINALLYSDDDDDEVTSTGHSPLVTKRTYVTQKQFADMKEEVASSDWPNKKQKLIDGGYNRLPPLVDSATSERLNETCEYVTDAELKYFSSGGVYAARQTKEDNLTAADIQLKKDKIRELLRVLENFIPGAKGKHPLLVIDGTIEYLKSLMSQTGTLKYH 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0224 379 PANTHER TRANSCRIPTION FACTOR BHLH145 44 378 IPR037546 -
Ssu1g0224 379 PANTHER TRANSCRIPTION FACTOR SAC51 44 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0224 Ssu-Chr1 5386730 5388376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0224 128 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G64340 40.392 6.83e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0224 - - gmx:100778385 596.275