Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0219 ATGGGGCTGCATCACAGAAAGTTGATGTCAGAAATCTGCGAATCAATTTGTCATGCGAAGGAGTCTGAGCCTTGTTCATCGGATTGCAAAGTTTGCCTCAAGATCTGCCTAATCAATCCCCaatatcctttttattattcTCCTCCAGCGCTGTCACCACAACTTCCTCCTTTCCACGCAGATGCTGATGACGTGGATCAAGGAAGCAACCACAATATCTCCACCTATTTGTTCCTCGCCCTCGCTCTTCTAACTGCTGCTTTCTTTGTCGTATGTTGTCGCGCCATCTACACCAGGTTTAGCTCAAGGTCGAGGAGGAGGGTATCATCAAGGCACCAAACTCGGGAGACCCGTGACGATGAAGAGCATGGCCCTGTGGTGGACCACCCCATATGGTATATCCGCACCCCTGGCCTCCAGCAATCGATCATCAATGCCATCACGGTTTGTAAGTATAAGAAAGGAGAGGGCTTGATTGAGGGAACGGAGTGTGCTGTTTGCTTGAGTGAGTTCCAAGAGGATGAGAATCTCAGGCTCTTGCCAAAATGTCATCATGCTTTTCATTTGCCTTGTATTGACACCTGGCTCAGGTCCCATACTAATTGTCCTATGTGCCGGGCTCCCATTGTTAGTGACCTTGCAACTGCTAGGGTGGACTCTAATTTTGTGGATTCAAATTCCTTGGAAAATACCCATATGGGAATTTTGGAAAATAGTGGTCCTGATTCTGAATTGTTGAATAGGGCAGAGGAAGAAGGCCAATTGGAGGTTGAAGATGGAGTAAGGGTGTGTGAAGCTGAAACCCCAGTTGAAGAAGTGGCAAGCATTCGCCCTAGGAGATCTGTTTCTCTGGATTCTTCTTCTGCTGCAAATATCAATTTTGCTCTTGCAACGGTTCTCTCAGTAGAATCTAATGGTAACTCAAATAGAGCGCTGGGAGGCGTGGATGATGATATTAGTGCTTCAAAGAGGGTTACTGGAAACGATTTGCCATCTAGTTCCAAAGGTAGCTCTTCTTTCAGGTTAACAAGATATCTGCAGGGTGTTCCTGTTTCAATGAAAAGGTCACAGTCCTACAACGGGAAATACCTTCTCTCCTGGTACGGCCGCAGTCAGAAGAAGCCAAATGCTGCTCCTCTGACAAGCTTCTAG 1152 0.4635 MGLHHRKLMSEICESICHAKESEPCSSDCKVCLKICLINPQYPFYYSPPALSPQLPPFHADADDVDQGSNHNISTYLFLALALLTAAFFVVCCRAIYTRFSSRSRRRVSSRHQTRETRDDEEHGPVVDHPIWYIRTPGLQQSIINAITVCKYKKGEGLIEGTECAVCLSEFQEDENLRLLPKCHHAFHLPCIDTWLRSHTNCPMCRAPIVSDLATARVDSNFVDSNSLENTHMGILENSGPDSELLNRAEEEGQLEVEDGVRVCEAETPVEEVASIRPRRSVSLDSSSAANINFALATVLSVESNGNSNRALGGVDDDISASKRVTGNDLPSSSKGSSSFRLTRYLQGVPVSMKRSQSYNGKYLLSWYGRSQKKPNAAPLTSF 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0219 383 MobiDBLite consensus disorder prediction 311 338 - -
Ssu1g0219 383 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Ssu1g0219 383 SMART ring_2 164 205 IPR001841 -
Ssu1g0219 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 213 IPR013083 -
Ssu1g0219 383 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 373 - -
Ssu1g0219 383 CDD RING-H2_PA-TM-RING 163 206 - -
Ssu1g0219 383 Pfam Ring finger domain 163 206 IPR001841 -
Ssu1g0219 383 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 8 373 IPR044675 -
Ssu1g0219 383 SUPERFAMILY RING/U-box 158 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0219 Ssu-Chr1 5315431 5316582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0219 73 263 C3H Transcription Factor Family AT1G72220 45.933 2.42e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0219 - - gmx:100804758 553.903