LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g0209	ATGGAGAAGAACAGCGCAGACCCAGGCTACTGGAAGAAGCCGATGGCCACCTTTCTCGTACGCTTCCATTCCGACCAGCTCCGCTCCATCGCTTCTTCTCCCGATCCCAACCTCCATTTCCCTCTTTTCGTCGATTTCGCAGAGTTGATGGAAGACGACCCTCGCATTGCCCGTCTACTCTTTGCCCAACCCAGCACCTACTTGCAATTCTTCGATGATGCTGCCCTTTGGGCCCATAAAATCGTGTTGGGAGATATGGCAGATGACAAGAAGGGGGTCGAGAAAAAATTCATTCATGTTCGTATTAACATCAGTGGCTCACCCCTTGAATGCCCTGAAAGTTTTCCAAGCATAGGACGTGTTCGCGTGCAGCACCGTGGGATTCTTCTCACTGTCAAGGGGATAGTAATCAGGTCCGGAGCAATCAAGATGCATGAAGGGGAGAGGAAGTACATGTGCCAAAATGCAAAAacaggtgtCTTCACAGTTTATCCTGAGGTGGAAGCTCGAAACTCCATATCACTACCTTCAATATGCCCAATTCAGCAGTCCAAGCCCTGTGGAGGCACAAAATTCCAGTATGTAGAGAATACTATAGTATGCCATGATTATCAGGAGATAAAAATTCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCAATTCCTCGTTCAATTCTTGTCATCTTAAAGGATGACCTTGTTGATATTGTTAAAGCTGGAGATGATGTGATTGTCACCGGTCTCTTAACAGCAAAATGGTCTCCAGAGTTGAAGGATGTGCGCTGCGACCTTGATCCTGTATTAATTGCCAACAATGTAAGGAGAATCAATGAACTGAAGTCAGAAATTGATATTTCTGATGATATTGTTATGAAGTTCAAGCAGTTTTGGGTTCACTTCAAAGATTCACCTTTAAAAGGGAGGAATGCTATCCTACGAGGAATTTGCCCACAAGTATTTGGCCTTTTCACTGTCAAGCTGGCTGTTGCATTAACACTTATTGGAGGTGTGCAACATGCTGATGCTTCTGGAACTAGAGTAAGAGGAGAGTCTCACTTACTCTTGGTTGGTGATCCTGGCACCGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAACCGATCTGTTATTACTACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCAGTGAAGGATGGAGGGGAATGGATGTTGGAAGCTGGGGCTCTTGTTTTGGCCGATGGAGGATTGTGTTGCATAGATGAATTTGATAGCATGAGGGAACATGATAGAGCAACGATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTCAGCACTAGAACAACTGTATTTGGTGCCACAAATCCCAAGGGACATTATGATCCCGATCAACCTCTGTCTGTCAATACAACACTCTCTGGTCCTTTATTAAGCAGGTTTGATATTGTCCTTGTTCTCTTGGATACAAAAAATCCTGATTGGGATGCAGTAGTTTCATCTCATATTCTTTCTGAGGCAGAACCAGATAGAACCAACAATGACGAAGATCTGGTAACTAAATGGCCTCTTCCTACACTCAAGAGGTACATACACTATGTGAAGGAAAATTTCAGACCAGTCCTAACGAGAGAGGCTGAAATAGTTATATCCAGTTATTATCAACTTCAAAGGAAATCTGCAACTGATAATGCAGCTAGGACAACTGTCCGCATGTTGGAAAGTTTGATACGCCTAGCTCAAGCCCATGCAAGGCTGATGTTCAGAAATGAGGTGACTCGACTAGATGCCATCACAGCTATTTTATGCATAGAATCCTCCATGACTACCTCGGCTATAGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTTACTGACAACCCTGATCAAGAATATGCAAAGCAAGAAAGATTGATCCTAGAAAAATTGGGATCAATAGATGACTTTTCTGATATGAATGAATAG	1989	0.4359	MEKNSADPGYWKKPMATFLVRFHSDQLRSIASSPDPNLHFPLFVDFAELMEDDPRIARLLFAQPSTYLQFFDDAALWAHKIVLGDMADDKKGVEKKFIHVRINISGSPLECPESFPSIGRVRVQHRGILLTVKGIVIRSGAIKMHEGERKYMCQNAKTGVFTVYPEVEARNSISLPSICPIQQSKPCGGTKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDIVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANNVRRINELKSEIDISDDIVMKFKQFWVHFKDSPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHADASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPDWDAVVSSHILSEAEPDRTNNDEDLVTKWPLPTLKRYIHYVKENFRPVLTREAEIVISSYYQLQRKSATDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYAKQERLILEKLGSIDDFSDMNE	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g0209	662	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	317	624	IPR027417	-
	Ssu1g0209	662	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	406	420	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Ssu1g0209	662	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	434	447	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Ssu1g0209	662	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	484	492	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Ssu1g0209	662	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	348	363	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Ssu1g0209	662	SMART	AAA_5	349	498	IPR003593	-
	Ssu1g0209	662	Gene3D	-	145	202	-	-
	Ssu1g0209	662	SUPERFAMILY	Nucleic acid-binding proteins	39	257	IPR012340	-
	Ssu1g0209	662	Pfam	MCM AAA-lid domain	533	614	IPR041562	-
	Ssu1g0209	662	ProSiteProfiles	MCM family domain profile.	307	510	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Ssu1g0209	662	Pfam	MCM P-loop domain	309	512	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Ssu1g0209	662	Gene3D	-	282	620	IPR027417	-
	Ssu1g0209	662	SMART	mcm	114	616	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Ssu1g0209	662	Gene3D	-	121	250	IPR012340	-
	Ssu1g0209	662	PANTHER	DNA HELICASE MCM9	33	653	-	-
	Ssu1g0209	662	CDD	MCM9	310	614	-	-
	Ssu1g0209	662	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	33	653	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Ssu1g0209	662	Pfam	MCM OB domain	121	250	IPR033762	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g0209	Ssu-Chr1	5199769	5217019	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g0209	15	639	Core DNA Replication Machinery Family	AT2G14050	76.433	0.0	1000

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g0209	K10738		-	gmx:100776255	1199.88