Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0206 ATGGAAAACGACGACGTCGACATGCACGCAGCGGACACTAACGAAGCAGTAGTgctttcaattttaattctctGCATTCGCCTAGTTTCGTCTTTTGGTGCTGCCGTCATCGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAGGATGAAGCTGCTGCTTTGCGAGAGATGCAAGCCAAGGTCGAGAAGGAGATGGGATCTGTGCAAGATGCTGGAACTGCTTCTGCGAGTCAGGCCAATAGAGAGGAAATAGATTCTCGATCAGTCTTTGTAGGCAATGTGGACTATTCATGCACTCCTGAAGAAGTGCAACAGCATTTCCAATCATGTGGAACAGTAAACAGAGTCACCATTCGAACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTAGAGTTCCTTGAGGCCGAGGCTGTTCAGGAGGCCCTTTTGCTGAACGAATCTGAACTTCATGGGCGCCAACTAAAGGTAACGGCTAAAAGGACCAACCTACCAGGGATGAAACAGCATCGTCCCCGCCGGTCCAATCCTTACATGGGGTTTCGAGGCAGAACCCCGTACGCACCTCCTTTTATGTATTCTCCATATGGATATGGGTACATTACActctattcttccttttttaatgtgagagaagagaaaatggcTCTAGCGTCGTCTTCATCCCTTATGACATTGAATGTGAAACCTTACCTTTTTGCGGCTCCTCGGAGATCCGTGGTGGTTACGAATTGCGCCAAGTCAACGGAGGGTTCGAAGTCAACGGCGGCCACAACATGGAGGAGTTGGAGCGTGGATAGTTGGAGGGCGAAGAAGGCAGTTCAGCTTCCTGAGTACCCAGATGCGAATGAATTGGATCAAGTCCTCCAAACCCTCTCCTCTTTCCCCCCTATCGTGTTCGCCGGAGAAGCCAGGAGCCTCGAGGAGAAACTCGCTCAGGCTGCCATGGGGAACGCTTTTCTCCTTCAGGGCGGTGATTGCGCTGAGAGCTTCAAGGAATTCAATGCCAACAACATCCGCGACACTTTCCGTGTCATCCTTCAAATGGGTGTCGTCCTCATGTTCGGTGGCCAAATGCCTGTTATCAAGGTGGGGAGAATGGCGGGTCAATTTGCAAAGCCAAGATCAGATCCATTTGAGGAGAAAAACGGAGTGAAGCTTCCAAGTTACAGGGGTGACAATGTGAATGGCGACACATTTGATGCGGCATCTAGAGTCCCCGATCCGCAGAGGATGATAAGAGCCTATTGCCAATCTGTGGCTACTCTGAACCTCTTGCGGGCGTTTGCCACTGGAGGTTATGCTGCCATGCAAAGGGTTAACCAATGGAATCTTGATTTCATGGAGCATAGTGAACAGGGAGACAGGTACCGTGAATTGGCTCATCGAGTGGATGAGGCTCTTGGCTTTATGGGTGTTGCTGGGCTCACATCCGAGCATCCAATCATGACTACAACAGACTTTTGGACCTCCCATGAGTGCTTGCTTCTCCCTTATGAGGAAGCACTTACTAGGGAGGATTCTACTACTGGGCTTTATTATGATTGCTCAGCTCACATGCTATGGGTTGGGGAACGTACCCGCCAACTTGATGGTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAGGTGAGTGATAAGATGGTTCCGGATGAACTTGTAAAGCTGATAGATATTCTGAACCCTAAAAACAAGCCAGGAAGAATTACAGTAATTGTTAGAATGGGAGCTGAGAACATGCGAGTGAAGCTTCCGCATCTTATCAGGGCAGTTCGCAGAGCAGGTCAAATTGTCACTTGGGTTAGTGACCCCATGCATGGGAACACCATCAAAGCTCCATCTGGACTTAAAACCCGCACTTTTGACGCAATAAGGGGTGAGTTGAGGGCATTCTTTGATGTTCATGACCAAGAAGGAAGCTACCCAGGAGGGGTGCATTTAGAGATGACTGGGCAGAACGTGACAGAATGTGTTGGAGGCTCACGTACTATTACTTATGATGACTTGAGCTCTCGCTACCACACTCATTGTGATCCAAGGCTTAATGCTTCTCAATCTCTCGAGCTTGCATTTAATATTGCAGAGAGGTTGCGCAAGAGAAGGCTCAATTCACTTAGAATTTAG 2148 0.4744 MENDDVDMHAADTNEAVVLSILILCIRLVSSFGAAVIELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDAGTASASQANREEIDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEAEAVQEALLLNESELHGRQLKVTAKRTNLPGMKQHRPRRSNPYMGFRGRTPYAPPFMYSPYGYGYITLYSSFFNVREEKMALASSSSLMTLNVKPYLFAAPRRSVVVTNCAKSTEGSKSTAATTWRSWSVDSWRAKKAVQLPEYPDANELDQVLQTLSSFPPIVFAGEARSLEEKLAQAAMGNAFLLQGGDCAESFKEFNANNIRDTFRVILQMGVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDTFDAASRVPDPQRMIRAYCQSVATLNLLRAFATGGYAAMQRVNQWNLDFMEHSEQGDRYRELAHRVDEALGFMGVAGLTSEHPIMTTTDFWTSHECLLLPYEEALTREDSTTGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMVPDELVKLIDILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPSGLKTRTFDAIRGELRAFFDVHDQEGSYPGGVHLEMTGQNVTECVGGSRTITYDDLSSRYHTHCDPRLNASQSLELAFNIAERLRKRRLNSLRI 715
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0206 715 Gene3D - 35 162 IPR012677 -
Ssu1g0206 715 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 2, CHLOROPLASTIC 239 712 - -
Ssu1g0206 715 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Ssu1g0206 715 Pfam Class-II DAHP synthetase family 266 702 IPR002480 GO:0003849|GO:0009073
Ssu1g0206 715 SUPERFAMILY Aldolase 259 706 - -
Ssu1g0206 715 SMART rrm1_1 90 161 IPR000504 GO:0003723
Ssu1g0206 715 SUPERFAMILY RNA-binding domain, RBD 79 187 IPR035979 GO:0003676
Ssu1g0206 715 Gene3D Aldolase class I 441 707 IPR013785 -
Ssu1g0206 715 CDD RRM_II_PABPs 90 161 - -
Ssu1g0206 715 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 239 712 IPR002480 GO:0003849|GO:0009073
Ssu1g0206 715 TIGRFAM DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 266 709 IPR002480 GO:0003849|GO:0009073
Ssu1g0206 715 Coils Coil 32 66 - -
Ssu1g0206 715 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 165 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu1g0206 Ssu-Chr1 5145682 5155582 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0206 90 160 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 1.36e-06 49.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0206 K01626 - gmx:100789764 922.924