Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0201 ATGTTAGACCACCTTTCATTTGCACTGTCTGTTTCAGGAGATTTGACAACTTTAGCCAATCAATTGGAAGAATTGCTTCCTGGGGCTATCCATAGAAATGAAAGGTACTATGCTCTAGCTCTTAGTTATTATGGAGCAAGTAAGGACTTGGTAGCGCTGGATCTTCTCAGAAAATTGTTACGCAATAGAAAGGACCAAAACCATGTTCTTCGTTTGTTAATGGTTTCTAAGATTTGTTGTGAGAGCTCTAGTCTGGCAGAAGAAGGAGTAAGCTTTGCTCAGAGAGTGCTTGACAGCTTGGACGGCAGATGTGATGAGCTAGAAAATCTTGCCAATTTCTTTCTTGGTGTTTCACTTTCAGCAAAATCGAAATTGGCCATTTCTGATTCTAAGAGGTTTAGGAGACAATCTAAGGCACTTCATGCTCTAAAAACTGCtggcaaaatgaccaaaatgagaACCCCCTTATACTGTACCATCTCAGTTTGGAATATGTAG 498 0.3855 MLDHLSFALSVSGDLTTLANQLEELLPGAIHRNERYYALALSYYGASKDLVALDLLRKLLRNRKDQNHVLRLLMVSKICCESSSLAEEGVSFAQRVLDSLDGRCDELENLANFFLGVSLSAKSKLAISDSKRFRRQSKALHALKTAGKMTKMRTPLYCTISVWNM 165
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0201 165 PANTHER PROTEIN NPG1 1 156 IPR043376 -
Ssu1g0201 165 Coils Coil 90 110 - -
Ssu1g0201 165 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 1 156 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu1g0201 Ssu-Chr1 5060222 5060719 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0201 1 154 Calmodulin-binding Proteins AT4G28600 47.403 1.99e-41 145
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0201 K21843 - gmx:100800762 214.157