Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0200 ATGGAGGCAGCGTTGAAGTTGGAGTCACTTGCGTGCATAGACTCCACCAGTCTCTCTCACTCCGAGCTCCTCgccctttctctctcctctctctgcGCCTTCGACGTTCGCTCCACCCATGACCTCGTCACTCCCAAGATCGACCCCGCGCTCTTCAACGAGAGCGCGGGCTCCCGCCGCCAGACCTACTCCCGGCCGCAGTCCTCCCCCACGGGGCGGCGCCGCCGCCTCGCCGGCCTCCTCCCCGCGCCAAAGCTCCCTCCGCTCCCCGCCCACGACCCGGAGAACGCCGAAAACCGCGTCATAATCGATTACCTCAAGCAGCTCATCAGAGAGGACCCGAAGTTCGACCTGGTCGAACTCGCCCCGCCCTCGGCTCCCCAGCCCAGGAAGCGGAAGCGAGGGCGGAAGCCCAAAGTGAAGGTCCACTTGGAAGAGTGCTACCGCGGAATGGACATGGTTAACAGAAACGGCGTCGCTGTGGATCTCTCCGCGTTGGCCAGCGCCGAGGACCCCTTCGCGGAGGAGCTGAAGAGACGCACCGAGGGTTTGCGGAACGAGGAGGAGTTGTTAGGGTTTTTGAGGGATTTGCCGGGGCAGTGGGGGAGCCGCCGGAAGAAGCGGAGGATCGTCGACGCCGCGGATTTCGGCGATGTGTTGCCGCTTCGCTGGAAGCTTCTCCTCGGCTTGAAGAGGAAGGACGGTCGCGCCTGGATCTATTGCCGCAGATACATTAGCCCCAGTGGAGAGCATTTTGTGTCTTGCAAAGAGGTTTCCTCGTATTTGCAGTCTCTTTTGGGTCATGGTGATGCGCAGTTGCAAATTAGTCGAAGGAGTGAAAATGTAGTGCAAGAACAGAGAGTGACTGCTGAAAATTCTATGGTTGTTACCCAGGACCATCAAGATCAGAGGCAGATTGTGGCTGCTAACTCGGATGTGTCTGGTTTGTCTGCTGCTAATGAACGAGTGAAGGAGGTTGCCTTGTTGGGTATTGAAAATCTTGCAGATGTGCAGATTCATGACCTGTTTGAATGTCGCAAGTGCAGCATGAGCTTTGAAGAGAAGGATTCGTACTTGCAGCACCTGTTATCATTTCACCAGAGGACGACGAGGCGGTACCGGCTTGGTTCGTCTGTTGGAGATGGAGTTATAATTAAAGATGGGAAGTTTGAGTGCCAGTTCTGTCATAAGGTGTTCCTAGAAAGGCGTCGCTACAATGGTCATGTGGGGATCCATGTTAGGAATTATGTGAGGAGAGTTGAAGATTCGCCAGGTCAGGCAAATGCCCAGAAGACGGACAAGTCTCCAGTCAGGGAGGACGTGCCTTTAAGGATATCTAAGATGGATGCCCTCATTGAAATTGCTCAAAACTCTATTATGGAGGATTCTGTCACGGAAGCCCATAGTTCAGCTAAACTGAGTAGGATTCCTGCTTCAGATATTGCTGTTGGTTATTTAGATCAAGACGGAAACTCTGAATCTCCGATCAGTGAACAGCAGATGACTGGAAAAAATGTGGATCATGATTTGGATGGAAAAGTAGAGGAAATAGATGATGATAACCATGTGATAGATGTAAAGATGGTTACTTTTCTAGATAACATGTGTTTGTTATCTGTAAATAAGCAAGATGTTAATGCATCTGAGACTTCTAAGGTAAAAGATGATGTAGCATTGACTATTGAGGAACTTGATCGGTCTGGGATTGATTTGGATGGCGTTTCTCAGAACTGTTTACTTCCTTTATCTGAACACCACATGATACCAGAATCTGAAAAGAGCGAAAATTCTGGAGGTGCTAATATGAAGGGTCAATTTAAACTTGACGAAGACATTAGTAACAAGAGTGAGTTGGAATTTGGTTTAAATGACTTGAAGGATGTACCTGTTACTGTTAGCACTAATGTCCAAGAGATGGTAATGCCAGCTTCTGAAGAAAATGTGGTACATCCTAGGGTTTTTAACCCCTCTATATCCACAGAACAATCTTTGGATTGTTCACCTGCATTCAACTCAGATAAGGAAGGAGAACAATTTTGCAGTGTTGACCATGAACATGATAATGTGAAGGGGTTCCAAGAATTGAGGTTTGATGAAATAGATACTGTTGAGTATGATTTTCCAAAGGTTCAAGATTCTCCTTCTCTGCCTGATGTACCAACTGACTTGGCAAATAACACAGTGATGGAAGGGACGTATGTATCCTCGGTTCAGTTTGAATCACAAGAAGTTATGCAGAATATTGGTCCCAGAAATCCGCTTTCAACTGTGTGTGTATGGTGTGGAATAGAGTTTAACCATGATGCTGTTAATTCTGAAATACAATCAGATTCTGTTGGATTCATGTGTCCAGCTTGTAAGGCAAAAATCTCTGGTCAAATCAATGTGTTGGACTGTGGATCGCCAAATGCTGGCTGTGTATAG 2424 0.4769 MEAALKLESLACIDSTSLSHSELLALSLSSLCAFDVRSTHDLVTPKIDPALFNESAGSRRQTYSRPQSSPTGRRRRLAGLLPAPKLPPLPAHDPENAENRVIIDYLKQLIREDPKFDLVELAPPSAPQPRKRKRGRKPKVKVHLEECYRGMDMVNRNGVAVDLSALASAEDPFAEELKRRTEGLRNEEELLGFLRDLPGQWGSRRKKRRIVDAADFGDVLPLRWKLLLGLKRKDGRAWIYCRRYISPSGEHFVSCKEVSSYLQSLLGHGDAQLQISRRSENVVQEQRVTAENSMVVTQDHQDQRQIVAANSDVSGLSAANERVKEVALLGIENLADVQIHDLFECRKCSMSFEEKDSYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRRVEDSPGQANAQKTDKSPVREDVPLRISKMDALIEIAQNSIMEDSVTEAHSSAKLSRIPASDIAVGYLDQDGNSESPISEQQMTGKNVDHDLDGKVEEIDDDNHVIDVKMVTFLDNMCLLSVNKQDVNASETSKVKDDVALTIEELDRSGIDLDGVSQNCLLPLSEHHMIPESEKSENSGGANMKGQFKLDEDISNKSELEFGLNDLKDVPVTVSTNVQEMVMPASEENVVHPRVFNPSISTEQSLDCSPAFNSDKEGEQFCSVDHEHDNVKGFQELRFDEIDTVEYDFPKVQDSPSLPDVPTDLANNTVMEGTYVSSVQFESQEVMQNIGPRNPLSTVCVWCGIEFNHDAVNSEIQSDSVGFMCPACKAKISGQINVLDCGSPNAGCV 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0200 807 ProSiteProfiles Zinc finger C2H2 type domain profile. 343 371 IPR013087 -
Ssu1g0200 807 SMART c2h2final6 390 412 IPR013087 -
Ssu1g0200 807 SMART c2h2final6 343 366 IPR013087 -
Ssu1g0200 807 ProSitePatterns Zinc finger C2H2 type domain signature. 345 366 IPR013087 -
Ssu1g0200 807 Gene3D Classic Zinc Finger 330 417 - -
Ssu1g0200 807 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 3 796 - -
Ssu1g0200 807 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 3 796 IPR037472 -
Ssu1g0200 807 MobiDBLite consensus disorder prediction 55 71 - -
Ssu1g0200 807 MobiDBLite consensus disorder prediction 120 139 - -
Ssu1g0200 807 ProSitePatterns Zinc finger C2H2 type domain signature. 392 412 IPR013087 -
Ssu1g0200 807 SUPERFAMILY DNA-binding domain 216 265 IPR016177 GO:0003677
Ssu1g0200 807 ProSiteProfiles Zinc finger C2H2 type domain profile. 390 417 IPR013087 -
Ssu1g0200 807 MobiDBLite consensus disorder prediction 53 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0200 Ssu-Chr1 5043886 5047727 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu1g0200 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0200 - - gmx:100526917 1222.22