Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0193 ATGGATTGTTTTTGTTGCTTTAACTCTGTCAATCAGGTGGTTGGAAGACGCTCTTCATGTAGCTCTGGCAAGGGCAAGAGCCATCAGTGCTCAGTTAAGTATGGCTTTAGCCTAGTTGAAGGGAAAGCAAACCACCCAATGGAGGACTATCACGTAGCAAAAATTGTCAAGTTTGGAGGGGAAGAATTAGGACTTTTTGCTATATATGATGGACACTTGGGAGACAGTGTGCCGGCCTATTTACAAAAGCATCTCTTTTCTAATATCTTGAAGGAAGAGGACTTCTGGACTGATCCAGCCAGTTCCATCATTAAAGCTTATGAGACAACAGATCAGGCCATTCTTTCTCACAGTTCTGATTTGGGGCGAGGAGGATCGACTGCAGTGACTGCAATTCTTATTAATAATCAGAAGTTATGGGTAGCAAATGTTGGAGATTCACGAGCAGTTCTGTCAAGGAGAGGGGTGGCCACACAGGTGACTGTTGATCATGAGCCTAATACTGAGAGGGGCATCATTGAGAACAAAGGCGGCTTTGTCTCAAACATGCCAGGAGATGTTGCAAGAGTGAATGGGCAGCTTGCAGTTTCTCGAGCATTCGGAGACAAAAACCTAAAATCACACTTACGATCTGATCCTGATGTACATCATGTTGATATTGACGCAGATGCTGAGCTTTTGATACTTGCTAGTGATGGTCTTTGGAAGGTAATGGCAAACCAAGAGGCAGTTGACATTGCAAGAAGGATAAAAGATCCACAAAAGGCAGCCAAACAACTAGTTGCCGAGGCATTGAGCAGAGAGAGCGCATTATTATTGAGTCGGACTCTCAATGTGCTATTCAGCTTCTCAATTGGGGGTGTCAAGTGTCAACCTTCTCATCCCTATCACCAAATGATAAACTTGATCATGGACTTCTCCCACCGTAGAGCGTCGCTGAGTTGGGACAAGCTTGCAGAGAGCAGAATCAGCCTGCTGATCTCCTAG 987 0.4488 MDCFCCFNSVNQVVGRRSSCSSGKGKSHQCSVKYGFSLVEGKANHPMEDYHVAKIVKFGGEELGLFAIYDGHLGDSVPAYLQKHLFSNILKEEDFWTDPASSIIKAYETTDQAILSHSSDLGRGGSTAVTAILINNQKLWVANVGDSRAVLSRRGVATQVTVDHEPNTERGIIENKGGFVSNMPGDVARVNGQLAVSRAFGDKNLKSHLRSDPDVHHVDIDADAELLILASDGLWKVMANQEAVDIARRIKDPQKAAKQLVAEALSRESALLLSRTLNVLFSFSIGGVKCQPSHPYHQMINLIMDFSHRRASLSWDKLAESRISLLIS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0193 328 Pfam Protein phosphatase 2C 43 269 IPR001932 -
Ssu1g0193 328 PANTHER PROTEIN PHOSPHATASE 2C 1 270 IPR015655 GO:0004722|GO:0006470
Ssu1g0193 328 SMART PP2C_4 29 275 IPR001932 -
Ssu1g0193 328 SUPERFAMILY PP2C-like 28 269 IPR036457 -
Ssu1g0193 328 ProSiteProfiles PPM-type phosphatase domain profile. 33 282 IPR001932 -
Ssu1g0193 328 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 1 270 - -
Ssu1g0193 328 CDD PP2Cc 32 269 IPR001932 -
Ssu1g0193 328 Gene3D - 16 274 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0193 Ssu-Chr1 5006142 5011697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0193 1 269 PP2C-type Phosphatase Gene Family AT1G22280 69.818 3.99e-136 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0193 K17506 - gmx:100787659 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1927 5 56359063 56367036 Ssu1g0193 1 5006142 5011697 PCT