Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0192 ATGGGGCACTGTCTTGCAAGCACTGTCAAATTGCTTAATGATCCTTCTCTTGCATCATTTCCTTCCATCCCATCTAGTTCAATGGGAAGCATCCTTGAACAAGAACATACCATTTTTGGTGACCTTTTAATGAGCAAAAGAGGTCTCACTCGGGAAGCAGAGACCTCTCAGTCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATTCAGGAGATATGTCAACCTTAACCCAATCATTGGGTCTGCAATTTGGATCTGATTATGGCACCGGTTTACTAGGGAATGAAACTCGTAATGCAAGTTCTGAAATTGCACCGATCCTGTATAGTTTTCATGGTGAACCAAAAGAGCAGTCTATGCAGCAAAACTATCCGAAAGAGCATGCAGATGGACAATCTCAGCATGCACTAAAATCCAATTCTGCAAATAAAGTTCCTGATGAAGAAACTATCAGCTATGGCTTAACTGTGAAGCGCACATTATTGGACAGAGACGAGAGCCTGAAGAAGGTTGATAGCTTCTCTCGGTGGGTTACTAAAGAACTTGGAGAGGTGGCTGATTTGAATATGCAGTCCTCACCTGGTATTTCATGGAGTACAGATGAATGCCAGCATGTGATAGATGATACCTCATTGAGCCCATCTCTCTCTCAGCACCAACTGTTTAGTATAAATGATTTTTCACCCAAATGGGCTTATGCTGAGTCAGAAATTGAGGTGTTGATTATTGGATCATTTTTGAAGAGTCAGCCAGAGGTGACAACCTATTACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCTGCTGAGGTTTTAGCTGATGGAATTTTGTGCTGTCAAGCTCCGCCTCATAAGTTTGGACGGGTCCCTTTCTATGTAACATGTTCCAATAGGTTAGCTTGTAGTGAAGTGCGGGAATTCGATTTCAGAGAGGGCTTTGCTAGAAATGtagattttgcagatttttaTAACAGTTCAGCTGAAATGCTACTTCATTTGCGACTGGaggattttatttctttaaggCCAGTGGACCCTTCAAATCAAGCTTTTGAGGGTGATATGGagaaaagaaacttaatttttaagcttatttcactgagagaggaagaggaatATTTGATTAAGGAAGAGCCAATTACAAAATTGGATATATCCCAACACAAGGTGATGGAGCATGTGTTTCACAGGCAGGTTAAAGAGAAGCTGTACTCATGGCTTCTTCACAAAGTAACTGAGAGTGGTAAAGGGCCAAATGTGTTAGATGAGGATGGGCAGGGTGTGCTACATTTAGCAGCTGTTCTTGACTATGATTGGGCCATAAATGCAATTATATCTGCTGGAGTTAATATCAACTTCCGAGATGTGAATGGATGGACAGCTCTTCATTGGGCTGCATCCTCTGGCAGAGAGCGGACAGTTGGTGTCCTTGTCTCCATGGGTGCAGATTGTGGAGCGCTGACAGATCCATCTCCAGCATTTCCGTCAGGTAGAACAGCTGCAGATCTTGCCTCTATGAATGGGCACAAAGGAATCTCTGGTTTTCTTGCTGAGTCTTCATTGACTCACCACCTTGAAACCCTCACAATGGATGATCAAAAAGGTGGTCGACAAGAAATTTCAGGAGTGAAAGTGGTGCAGACAGTTTCAGAACGAGCTGCAACACCTGTGCTCTATGGTGATATCCCAGATGCCCTCTGTCTCAAGGATTCGCTTACTGCTTTGCGTAATGCAACGCAAGCTGCTGATCGTATACATCAAGTATACAGAATGCAGTCATTTCAGAGGAAGAAGTTAACTCAGTATGAAAGTGATGAGCTTGGATTGTCAGATCAGCAAGCTCTTTCCCTTCTAACTTCTAGGGCATGCAAATCTGGACAAGGTGATGGTTTAGCCAATGCTGCTGCAGTACAGATACAGAAAAAGTTTCGTGgttggaagaagagaaaagaattcTTGATGATTCGTCAAAGAATTGTTAAAATCCAGGCCCATATAAGAGGTCACCAGGTAAGGAAACAGTATAAAACAATCATCTGGTCTGTGGGAATCTTGGAGAAGGTCATATTACGTTGGAGGCGCAAGGGTAGCGGTTTACGCGGATTTCGACCAGATGCACTCAATAAAGTCCCCAGTCAACAAAATGATTCTCTGAAAGAAGATGATTATGATTATCTCAAGGAGGGAcggaaacaaaaggaagaaaagatcCAAAAGGCCCTATCAAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGCGCTCAATACCGGCGTCTGCTAAATGTTGTCGAGGACTTGCATCAAACCAAGGCATCTAACAAGGGTTTGATCAATTCTGAAGAGACAGTTGATGGTGTGGAGGATTTGATTGATATTGATATGCTTTTAGACGATGATAATTTCATTCCTCTAGCATTTAATTGA 2430 0.4086 MGHCLASTVKLLNDPSLASFPSIPSSSMGSILEQEHTIFGDLLMSKRGLTREAETSQSLQSNWQIPFEDNSGDMSTLTQSLGLQFGSDYGTGLLGNETRNASSEIAPILYSFHGEPKEQSMQQNYPKEHADGQSQHALKSNSANKVPDEETISYGLTVKRTLLDRDESLKKVDSFSRWVTKELGEVADLNMQSSPGISWSTDECQHVIDDTSLSPSLSQHQLFSINDFSPKWAYAESEIEVLIIGSFLKSQPEVTTYYWSCMFGEVEVPAEVLADGILCCQAPPHKFGRVPFYVTCSNRLACSEVREFDFREGFARNVDFADFYNSSAEMLLHLRLEDFISLRPVDPSNQAFEGDMEKRNLIFKLISLREEEEYLIKEEPITKLDISQHKVMEHVFHRQVKEKLYSWLLHKVTESGKGPNVLDEDGQGVLHLAAVLDYDWAINAIISAGVNINFRDVNGWTALHWAASSGRERTVGVLVSMGADCGALTDPSPAFPSGRTAADLASMNGHKGISGFLAESSLTHHLETLTMDDQKGGRQEISGVKVVQTVSERAATPVLYGDIPDALCLKDSLTALRNATQAADRIHQVYRMQSFQRKKLTQYESDELGLSDQQALSLLTSRACKSGQGDGLANAAAVQIQKKFRGWKKRKEFLMIRQRIVKIQAHIRGHQVRKQYKTIIWSVGILEKVILRWRRKGSGLRGFRPDALNKVPSQQNDSLKEDDYDYLKEGRKQKEEKIQKALSRVKSMVQYPEARAQYRRLLNVVEDLHQTKASNKGLINSEETVDGVEDLIDIDMLLDDDNFIPLAFN 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0192 809 SUPERFAMILY E set domains 225 310 IPR014756 -
Ssu1g0192 809 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Ssu1g0192 809 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 13 809 - -
Ssu1g0192 809 Pfam Ankyrin repeats (3 copies) 404 486 IPR002110 GO:0005515
Ssu1g0192 809 MobiDBLite consensus disorder prediction 117 146 - -
Ssu1g0192 809 ProSiteProfiles Ankyrin repeat region circular profile. 458 484 - -
Ssu1g0192 809 Gene3D - 633 680 - -
Ssu1g0192 809 ProSiteProfiles IQ motif profile. 633 662 IPR000048 GO:0005515
Ssu1g0192 809 ProSiteProfiles Ankyrin repeat profile. 458 490 IPR002110 GO:0005515
Ssu1g0192 809 Gene3D - 387 529 IPR036770 -
Ssu1g0192 809 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 13 809 - -
Ssu1g0192 809 Pfam IQ calmodulin-binding motif 658 677 IPR000048 GO:0005515
Ssu1g0192 809 Pfam IQ calmodulin-binding motif 635 653 IPR000048 GO:0005515
Ssu1g0192 809 Pfam IPT/TIG domain 225 299 IPR002909 -
Ssu1g0192 809 SMART iq_5 655 677 IPR000048 GO:0005515
Ssu1g0192 809 SMART iq_5 632 654 IPR000048 GO:0005515
Ssu1g0192 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 683 IPR027417 -
Ssu1g0192 809 ProSiteProfiles IQ motif profile. 656 680 IPR000048 GO:0005515
Ssu1g0192 809 Gene3D Immunoglobulins 218 313 IPR013783 -
Ssu1g0192 809 SUPERFAMILY Ankyrin repeat 413 519 IPR036770 -
Ssu1g0192 809 SMART ANK_2a 425 454 IPR002110 GO:0005515
Ssu1g0192 809 SMART ANK_2a 497 526 IPR002110 GO:0005515
Ssu1g0192 809 SMART ANK_2a 458 487 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0192 Ssu-Chr1 4985859 4991861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0192 149 790 CAMTA Transcription Factor Family AT5G64220 59.385 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0192 K21596 - gmx:100818124 1420.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1929 5 56389640 56400199 Ssu1g0192 1 4985859 4991861 PCT