Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0190 ATGTCTTCGTCTCTTTCAGTTCCGATTCCAATTCCGATCGCAGTGGATTCTGCGTCGTGTGTGACGGTGGCGCAGATGGCGCTTTTCAAACCTCTGAAGCACCGCCATTTGGTGAGAGGCAGAGTCAGAGTCCGACCCCTTCATCGCCGCCTCGATTCCGTTACGCCTTTGCGGTGCTCTTCCGCCGGTGACGACGCCGTCATTACTCTCCACGTTGGGGGAATGATGTGCGAGGGATGTGCAAGTAGcgtcaaaaaaattttagaaagccGACCACAAGTGTTATCTGCTCATGTAAATCTGACATCGGAGACTGCAATTGTTTCCCCTGCACCTGAACAAAAAACTGCACCAAATTACCTGAAGCAATTAGGGGAAGAACTTGCACAGCATTTAACTACCTGTGGTTTCACTTCTACCCTTCGAGGTATGGGTTCAAGATTCTCAACATATTCattgtttcattttgtttttgttgtggtgttATTTTGCAAATGTCACtgtatttgtttttatgaatttttttgcaatATAGAAGAAAGGTAA 546 0.4158 MSSSLSVPIPIPIAVDSASCVTVAQMALFKPLKHRHLVRGRVRVRPLHRRLDSVTPLRCSSAGDDAVITLHVGGMMCEGCASSVKKILESRPQVLSAHVNLTSETAIVSPAPEQKTAPNYLKQLGEELAQHLTTCGFTSTLRGMGSRFSTYSLFHFVFVVVLFCKCHCICFYEFFCNIEER 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0190 181 CDD HMA 69 108 IPR006121 GO:0046872
Ssu1g0190 181 Pfam Heavy-metal-associated domain 69 126 IPR006121 GO:0046872
Ssu1g0190 181 ProSiteProfiles Heavy-metal-associated domain profile. 67 141 IPR006121 GO:0046872
Ssu1g0190 181 Gene3D - 67 144 - -
Ssu1g0190 181 SUPERFAMILY HMA, heavy metal-associated domain 64 120 IPR036163 GO:0046872
Ssu1g0190 181 ProSitePatterns Heavy-metal-associated domain. 72 101 IPR017969 GO:0046872
Ssu1g0190 181 PANTHER ATP7, ISOFORM B 56 141 - -
Ssu1g0190 181 PANTHER COPPER-TRANSPORTING ATPASE PAA1, CHLOROPLASTIC 56 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0190 Ssu-Chr1 4949187 4949968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0190 67 142 Primary Pumps ATPases AT4G33520 67.105 9.43e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0190 K17686 - gmx:100527143 213.386