Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0188 ATGTTTAGAAAGGCCCCAATTAATGGAAATGAAGACATTCTTGGAGCTTTATCACTTGTCTTGTACACTTTAATCTTGATTCCTTTAGTGAAGTATGTGCTGGTGGTTTTGTGGgccaatgatgatggtgaagGTGGTACTTTTGCCTTGTACTCCTTGATCTGTCGTCATGCTAAGGTGAGTCTTCTCCCCAACCAGTTACCATCCGATGCCCGTATATCAAGCTTTAGGCTGAAGGTGCCATCCCCCGAGCTTGAAAGGTCATTAAAAATCAAGGAAAGACTTGAGAATTCTCTGTCTCTGAAGAAGACGCTACTAATATTAGTGCTTGCTGGTACTTCTATGGTGATTGCTAATGGTGTTGTTACACCAGCAATGTCAGTACTGTCATCTGTTGGTGGTTTAAAAGTTGGGGTAGATGCAATCAAGAAAGATGAAGTGGTGATGATTTCGGTTGCCTGCCTTATCATTTTGTTCAGTGTACAGAAGTATGGAACAAGTAAAGTGGGACTTGCAGTAGGACCTGCTTTGTTCTTGTGGTTTTGTTCTCTTGCGGGCATCGGGATATACAATCTTGTCAAATATGATAGTAGTGTCTTGAGGGCATTTAATCCAATTCACATCTACTATTTCTTCAAGAGGAACTCAACTAAAGCATGGTATTCTCTTGGGGGTTGCCTTCTGAGTGCTACTGGTTCTGAGGCCATGTTTGCAGATCTTTGCTACTTTTCTGTACGATCAGTTCAGctttcatttgtttttcttgttttgccGTGCCTACTATTGGGTTATTTGGGTCAAGCTGCATATCTTATGGAAAACCATGCTGATGCTGGTCAAgcctttttttcttctgttcCAAGTGGTGCTTTTTGGCCAACTTTCTTTATTGCCAACATTGCTGCACTGATTGCGAGTCGGGCTATGACAACAGCAACATTTTCGTGTATAAAGCAATCAACTGCGCTTGGTTGTTTCCCTCGTCTTAAAATCATTCATACCTCTCGGAAATTTATGGGCCAGATCTATATCCCTGTCATAAACTGGTTCCTCTTGGCTCTTTCTCTGGTGCTTGTCTGCTCTATATCTAGCATTGATGAGATTGGAAATGCCTATGGCATTGCTGAGCTCGGGGTGATGATGATGACCACTATTTTAGTAACCCTTGTTATGATTCTTATATGGCAGATACACATCATCATAGTGCTGACTTTTGTGGTAGTCTTCTTGGGATTGgaattgacttttttttcatCTGTCCTGTGGAGTGTGACAGATGGAAGTTGGATTATATTGGTCTTTGCCATAATAATGTTTCTTATAATGTATGTATGGAATTATGGAAGCAATCTCAAGTATGAAACTGAAGTCAAGCAAAAGCTGTCAATGGATTTGATGCGAGAATTAGGTTGTAATCTCGGGACAATACGAGCTCCTGGGATGGGTTTGCTTTATAATGAGTTGGTCAAAGGGATACCAGCAATTTTTGGCCATTTTCTGACCACACTTCCAGCAATACACTCCATGATCATATTTGTGAGTATCAAGTATGTTCCAGTTCCTATGGTACCACAAAGTGAAAGGTTCCTTTTTCGGCGAGTCTGCCCAAAAAGCTATCATATATTTCGTTGTATTGCCAGGTATGGTTACAAAGATGTTCGGAAAGAAAATCACCAGACTTTTGAGCAGCTGCTGATTGAGAGCCTAGAGAAGTTTATACGCCGTGAGGCTCAGGAGAGGTCACTGGAGAGTGATGGGGATGATGATACTGATTCAGAGGATGAGTACCCTAGTTCTAGGGTTCTCGTAGCTCCCAATGGGAGTGTTTACTCACTTGGTATTCCTCTTCTCGCTGATTTTAAGGATACAAGCAACCCCATTTTAGAAGCAAGCACATCAGAGGTGGTAGGCCCAGTATCCTCTCAGCCCCCGGTGTTTGATGCTGAGCAGAGCCTTGAGAGCGAGTTATCTTTTATTCACAAGGCTAAAGAATCAGGAGTTGTTTATCTTCTGGGTCATGGGGATATAAGGGCAAGGAAGGACTCATGGTTTATCAAGAAGTTagttataaactatttttatgcCTTTTTGAGAAAGAACTGCAGAAGGGGGATCACGACTTTAAGTGTACCACACTCACATCTGATGCAAGTTAGCATGACTTACATggtttga 2175 0.4014 MFRKAPINGNEDILGALSLVLYTLILIPLVKYVLVVLWANDDGEGGTFALYSLICRHAKVSLLPNQLPSDARISSFRLKVPSPELERSLKIKERLENSLSLKKTLLILVLAGTSMVIANGVVTPAMSVLSSVGGLKVGVDAIKKDEVVMISVACLIILFSVQKYGTSKVGLAVGPALFLWFCSLAGIGIYNLVKYDSSVLRAFNPIHIYYFFKRNSTKAWYSLGGCLLSATGSEAMFADLCYFSVRSVQLSFVFLVLPCLLLGYLGQAAYLMENHADAGQAFFSSVPSGAFWPTFFIANIAALIASRAMTTATFSCIKQSTALGCFPRLKIIHTSRKFMGQIYIPVINWFLLALSLVLVCSISSIDEIGNAYGIAELGVMMMTTILVTLVMILIWQIHIIIVLTFVVVFLGLELTFFSSVLWSVTDGSWIILVFAIIMFLIMYVWNYGSNLKYETEVKQKLSMDLMRELGCNLGTIRAPGMGLLYNELVKGIPAIFGHFLTTLPAIHSMIIFVSIKYVPVPMVPQSERFLFRRVCPKSYHIFRCIARYGYKDVRKENHQTFEQLLIESLEKFIRREAQERSLESDGDDDTDSEDEYPSSRVLVAPNGSVYSLGIPLLADFKDTSNPILEASTSEVVGPVSSQPPVFDAEQSLESELSFIHKAKESGVVYLLGHGDIRARKDSWFIKKLVINYFYAFLRKNCRRGITTLSVPHSHLMQVSMTYMV 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0188 724 TIGRFAM kup: potassium uptake protein 8 723 IPR003855 GO:0015079|GO:0016020|GO:0071805
Ssu1g0188 724 MobiDBLite consensus disorder prediction 579 598 - -
Ssu1g0188 724 Pfam K+ potassium transporter 8 552 IPR003855 GO:0015079|GO:0016020|GO:0071805
Ssu1g0188 724 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 1 723 IPR003855 GO:0015079|GO:0016020|GO:0071805
Ssu1g0188 724 PANTHER POTASSIUM TRANSPORTER 1 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0188 Ssu-Chr1 4933424 4942946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0188 1 724 Inorganic Solute Cotransporters AT5G09400 81.481 0.0 1191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0188 - - gmx:100788008 1303.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1935 5 56515705 56525451 Ssu1g0188 1 4933424 4942946 PCT