Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0181 ATGGGGTTTCACCTTTTTGTCCTTCAACACATTACTTTCTCAGTCCTTGCTATTCTGACCACACTTGCTATAGCTCAAAAAGATCATGTAGGCAACAATAGCTTCAATTCTCCCACCCCACTACCCTTAAATGGCACTGACAACAGTGGAGTCCAAGATAAACCTGCAGATAAAAATAACAGTTCCAatgatatttcaataattttcaatgtGGTTCTTCTTGTTGCAATTATATTGCTATTGCTGCTTTACTACAACACATCCAGAAAGCTCAGTAAAATAGTGAAGGGGCAGATTTCCACtgtcaaagaaaaagagaatgatGGGGAGATCAGTGCTGACAAGAAGATAGAGATAGGAGAGGGGACAATGATGATGACAgtggaagagagaaaagaacTTGTATTCTTTAATGATAAGCCAAAATTTCAAATGGGTGAACTTCTTAGAGCTTCTGCTGAGTCACTGGGTCACGGGATCCTGGGAAATAGTTATAAGGCTATGCTGAATGATGGACCGGCCATTGTTGTAAAAAGGCTAAGGGACTTAAAGCCGCTCACTAAGGAGGAGTTTGCAAAGATATTAAATGTGATTGCTGATTTGAAGCACCCCAATTTGTTGCCCTTGCTTGCTTACTACCATTCCAGAGATGAGAAGCTGATGCTCTACAGATATGCAGAGAACGGAAATCTTTTCTCCCGACTTCATGACGGCAGAGGTGGAAACCGAGTTCCATTCAGTTGGAACTCAAGATTGTCAGTTGCACGCGGAGTGGCTCGAGCATTGGTGTACCTGCACCTGAACAACAAGTTCCCCAACATTGTCCCACATGGCAACTTGCGGTCTTCAAACGTACTCTTGGACGAAAACGATGCTGCTCTTGTTTCTGAGTTTGGTCTTGCCTCCTTAATAGCGCAGCCAATTGCAGCTCAGCACATGGTTGTTTACAAATCACCCGAATATGGGTATGCAAAAAAGGTGACAATGCAATCCGATGTTTGGAGCTATGGTTCCCTTCTAATAGAGCTTTTAACAGCCAAAGTGTCTGTTTGCTCAGCTCCACCAGGGACCAGTGGCGTGGATCTATGCAGCTGGGTTCACAGAGCTGTGAGAGAAGAATGGACTGCTGAGATCTTTGACAAAGAAATTTCTGGCCAAAAGAGTGCACTTCCTGGGATGCTAAGGTTGTTGCAGATCGCAATGCGTTGCATTGAGAGGTTCCCTGAGAAACGTCCTGAGATGAGAGAGGTGGTGAGAGAAGTGGAGAAAATACAGGCCCCCTTGATCTCCGAAGATGAGGATGATGTGTCTGGGGATAGGTCCCTAACTGATGATTCCCTTTCAACCAGCACTTCCATTACTGGAGATGAAAGATAG 1377 0.4285 MGFHLFVLQHITFSVLAILTTLAIAQKDHVGNNSFNSPTPLPLNGTDNSGVQDKPADKNNSSNDISIIFNVVLLVAIILLLLLYYNTSRKLSKIVKGQISTVKEKENDGEISADKKIEIGEGTMMMTVEERKELVFFNDKPKFQMGELLRASAESLGHGILGNSYKAMLNDGPAIVVKRLRDLKPLTKEEFAKILNVIADLKHPNLLPLLAYYHSRDEKLMLYRYAENGNLFSRLHDGRGGNRVPFSWNSRLSVARGVARALVYLHLNNKFPNIVPHGNLRSSNVLLDENDAALVSEFGLASLIAQPIAAQHMVVYKSPEYGYAKKVTMQSDVWSYGSLLIELLTAKVSVCSAPPGTSGVDLCSWVHRAVREEWTAEIFDKEISGQKSALPGMLRLLQIAMRCIERFPEKRPEMREVVREVEKIQAPLISEDEDDVSGDRSLTDDSLSTSTSITGDER 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0181 458 MobiDBLite consensus disorder prediction 442 458 - -
Ssu1g0181 458 Pfam Protein tyrosine and serine/threonine kinase 154 420 IPR001245 GO:0004672|GO:0006468
Ssu1g0181 458 PANTHER OS05G0588300 PROTEIN 47 453 - -
Ssu1g0181 458 Gene3D Transferase(Phosphotransferase) domain 1 226 443 - -
Ssu1g0181 458 MobiDBLite consensus disorder prediction 428 458 - -
Ssu1g0181 458 Gene3D Phosphorylase Kinase; domain 1 119 225 - -
Ssu1g0181 458 PANTHER RECEPTOR-LIKE KINASE 47 453 - -
Ssu1g0181 458 ProSiteProfiles Protein kinase domain profile. 150 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0181 458 SUPERFAMILY Protein kinase-like (PK-like) 154 427 IPR011009 -
Ssu1g0181 458 MobiDBLite consensus disorder prediction 35 57 - -
Ssu1g0181 458 SMART serkin_6 150 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0181 Ssu-Chr1 4830745 4832919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0181 115 450 Receptor kinase-like Gene Family AT2G36570 40.169 5.34e-77 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu1g0181 PK_Tyr_Ser-Thr 1.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0181 - - gmx:100816006 633.254