Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0179 atgaagggTGGTTTGTCGAACAAAGACTTCCTTCTGAAGTTTCTTTTGCTTGCTGTGGCTGTTGTGAACCCTGTGCATGGCCATGGCACGCGTGTAGGGTTCTATTCGAGTACATGTCCACGTGCTGAGTCCATTGTTAGGTCCACAGTTCAATCCTATGTGAGGTCTGATCCTACTTTAGCTGCTGGGTTACTCAGGATGCACTTTCATGATTGCTTTGTGCGAGGTTGTGACGCTTCTGTTCTCATTGCTGGCTCTGACACTGAGAGATCAGCGGGACCAAACGCTAATTTGAGAGGCTACGAGGTTATTGATGATGCAAAGGCAAAGCTCGAGGCTGTGTGCCCTGATGTTGTGTCTTGTGCTGATATCCTTGCCCTAGCAGCTCGTGATTCTGTAGTtctgAGTGGTGGATTAAGTTGGCAAGTGTCCACAGGACGCAAAGATGGAACGGTTTCAATTGGAACCGAAACCAGAACTTTGCCTGGTCCTAATGATACCGTTGCAGTGCAGAAGAAGAAGTTTTCTGATAAGGGTCTTAACATCCAAGACCTCGTGATTCTTGCTGGTGGGCATACGATCGGTACGACTGCTTGCCAATTTTTCGCAGACAGAATATACAGTGCTAACGGTACTGACTCTTCCATCGACCCTTCATTTGTTCCATTTATGAGACAAATTTGCCCACAAAACCAACCAACGAAGCGAGTGGCACTAGACACAGGTAGCCAATTCAAGTTCGACACATCTTACTTCGCTAACCTAAAGAGAGGCCACGGAATTCTACGTTCTGATCAGGTGCTTTGGACTGATGCTTCCACAAGAGGCATTGTTCAGAAATTCTTAGCCACTGGTCCCTTCAACGTGGAATTTGGCAAATCTATGGTGAAGATGGGCAACATTGAGTTGAAGACCGGCACTCATGGTGAAATTCGCAGGAAATGTTCtgttattaattaa 960 0.4562 MKGGLSNKDFLLKFLLLAVAVVNPVHGHGTRVGFYSSTCPRAESIVRSTVQSYVRSDPTLAAGLLRMHFHDCFVRGCDASVLIAGSDTERSAGPNANLRGYEVIDDAKAKLEAVCPDVVSCADILALAARDSVVLSGGLSWQVSTGRKDGTVSIGTETRTLPGPNDTVAVQKKKFSDKGLNIQDLVILAGGHTIGTTACQFFADRIYSANGTDSSIDPSFVPFMRQICPQNQPTKRVALDTGSQFKFDTSYFANLKRGHGILRSDQVLWTDASTRGIVQKFLATGPFNVEFGKSMVKMGNIELKTGTHGEIRRKCSVIN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0179 319 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0179 319 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0179 319 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0179 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0179 319 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0179 319 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0179 319 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0179 319 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0179 319 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0179 319 PANTHER PEROXIDASE 9 317 - -
Ssu1g0179 319 Gene3D Peroxidase, domain 2 162 298 - -
Ssu1g0179 319 Pfam Peroxidase 46 282 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0179 319 CDD secretory_peroxidase 31 318 IPR033905 GO:0004601|GO:0042744
Ssu1g0179 319 ProSiteProfiles Plant heme peroxidase family profile. 29 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0179 319 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0179 319 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0179 319 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0179 319 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0179 319 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0179 319 ProSitePatterns Peroxidases active site signature. 61 72 IPR019794 GO:0004601
Ssu1g0179 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Ssu1g0179 319 PANTHER PEROXIDASE 25-RELATED 9 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0179 319 SUPERFAMILY Heme-dependent peroxidases 31 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu1g0179 319 Gene3D - 33 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0179 Ssu-Chr1 4761531 4763565 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0179 11 319 Peroxidase AT5G64120 57.595 7.95e-131 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0179 K00430 - gmx:100789249 513.072