Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0178 aTGGAGGGTGGTAATTTGTGGAACAATAGCTTCCTTCTAGTGTTTCTTTTGCTAGCTATGGCTGTTGCAAACACAGTGAATGGCCACCGCACGCGTGTAGAGTTCTATTCGAACTCATGTCCTCGAGCTGAGTGCATTGTTAAATCCACAGTTGAATCCTACGTTAAGTCTGACCCAACTCTCGCTGCTGGGTTGCTTAGACTGCACTTCCATGATTGCTTCGTGCGAGGTTGTGACGCTTCTGTTCTCATTGATGGCTACGGTACTGAGAGAAGAGCCCCACCAAACGTTAACTTGAGAGGATTTGAGGTCATTGATGGTGCAAAGGCTCAGATCGAGGCTGTGTGCCCTGGTGTTGTGTCTTGTTCTGATATCCTTGCCCTTGCTGCTCGCGATGCCGTTGTTATGAGTGGTGGACTAAGTTGGCAAGTGCCCACTGGACGTAGGGATGGAAGGGTTTCAATTGGATCGGAAACCAGTGCTCTGCCTGCTCCTAATGATACTATTGCAATCCAGAAGCATAAGTTTTCTGTTCTTGGTCTCAACATTCGAGACCTCGTCATTCTTGCCGGCGGGCACACGATTGGTAGAACTGCTTGCCAATTCTTCGCTGACAGAATATATGGCTCAAATGGTACGGATCCTTCCATCAAGCCTTCGTTTGTTCCAACTCTGCGACAAATTTGCTCACAAAATGAGCCAACGAAGCGAGTGGCACTAGACACTGGTAGCCAATTCAAATTTGACACATCTTACTTCGTTAACCTGAAGAAAGGCCACGGAATTCTCCGTTCTGATCAGGTGCTTTGGACTGATGCTTCCACAAGGAAGATTGTTAAGAAATATTTAGCCACAAATCGCTTCAACGTGAGATTTGGCAAGTCTATGGTGAAGATGGGCAACATTGGTGTGATGACGGGTGCTAAGGGTGAAATTCGAAGGACGTGTTCTGCTGTTAATTATTTGTACTCGctggtgtttttttttcttgctttggCTATTGTCAACACGGTGCGTGGCCAAGGGACACGTGTAGGGTTCTATTCGAGTGCATGTCCTCGCGCTGAGTCCATTGTTAGGTCCACGGTTCAATCCCACGTGAGATCTGATCCTACCTTGGCAGCTGGGTTGCTTCGGATGCACTTCCATGACTGCTTTGTGCAAGGTTGTGATGGTTCTGTTCTCATTTCCGGTGCTGGCACTGAGAGGACAGCAATTGCAAATCTTGGTTTAAGAGGGTACGAGGTTGTTGATGATGCAAAGACACAGCTCGAGGCTGCATGCCCCGGTGTTGTGTCTTGTGCTGATATCCTTGCCCTTTCTGCTCGTGATTCCGTTGTTCTGAGTGGTGGACTGAGTTGGCAAGTGCCTACTGGACGCAGAGATGGGCGCATATCACAGGCTTCGGATGTCAATAATTTGCCTTCCCCTTTTGACTCTGTTGATGTTCAGAAACAGAAGTTCTCAGCAAAGGGCCTCAACACTCAAGACCTCGTCACCCTTGTTGGCTTGCTTGGATTAACATTCAATGTGGAATTTGGAAAGTCTATGGTGAAAATGAGCAACATTGAGTTGAAGACTGGTACTGCTGGTGAAATTCGCAAGATATGTTCTGCCATCAACTAG 1626 0.4686 MEGGNLWNNSFLLVFLLLAMAVANTVNGHRTRVEFYSNSCPRAECIVKSTVESYVKSDPTLAAGLLRLHFHDCFVRGCDASVLIDGYGTERRAPPNVNLRGFEVIDGAKAQIEAVCPGVVSCSDILALAARDAVVMSGGLSWQVPTGRRDGRVSIGSETSALPAPNDTIAIQKHKFSVLGLNIRDLVILAGGHTIGRTACQFFADRIYGSNGTDPSIKPSFVPTLRQICSQNEPTKRVALDTGSQFKFDTSYFVNLKKGHGILRSDQVLWTDASTRKIVKKYLATNRFNVRFGKSMVKMGNIGVMTGAKGEIRRTCSAVNYLYSLVFFFLALAIVNTVRGQGTRVGFYSSACPRAESIVRSTVQSHVRSDPTLAAGLLRMHFHDCFVQGCDGSVLISGAGTERTAIANLGLRGYEVVDDAKTQLEAACPGVVSCADILALSARDSVVLSGGLSWQVPTGRRDGRISQASDVNNLPSPFDSVDVQKQKFSAKGLNTQDLVTLVGLLGLTFNVEFGKSMVKMSNIELKTGTAGEIRKICSAIN 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0178 541 ProSiteProfiles Plant heme peroxidase family profile. 342 541 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 PANTHER PEROXIDASE 25-RELATED 326 503 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 ProSitePatterns Peroxidases active site signature. 374 385 IPR019794 GO:0004601
Ssu1g0178 541 CDD secretory_peroxidase 32 319 IPR033905 GO:0004601|GO:0042744
Ssu1g0178 541 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Ssu1g0178 541 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601
Ssu1g0178 541 PANTHER PEROXIDASE 25-RELATED 504 539 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 PANTHER PEROXIDASE 25-RELATED 10 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 PANTHER PEROXIDASE 326 503 - -
Ssu1g0178 541 PANTHER PEROXIDASE 10 318 - -
Ssu1g0178 541 Gene3D - 34 320 - -
Ssu1g0178 541 PANTHER PEROXIDASE 504 539 - -
Ssu1g0178 541 Gene3D Peroxidase, domain 2 163 299 - -
Ssu1g0178 541 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 Pfam Peroxidase 359 504 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 Pfam Peroxidase 47 283 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 SUPERFAMILY Heme-dependent peroxidases 344 541 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 CDD secretory_peroxidase 344 540 IPR033905 GO:0004601|GO:0042744
Ssu1g0178 541 ProSiteProfiles Plant heme peroxidase family profile. 30 320 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 Gene3D - 344 493 - -
Ssu1g0178 541 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g0178 541 SUPERFAMILY Heme-dependent peroxidases 32 320 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0178 Ssu-Chr1 4688221 4722073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0178 508 541 Peroxidase AT5G64120 67.647 2.17e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0178 K00430 - gmx:100789249 463.766