Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0176 ATGAGAACCCCCTTAGATTTTCTCCCACTTCACATCCACTCACACATAAAATCACTCCAAGTGGTGCATTTGCAAAGTAACCTTCAGAAGCAGCCTctattttctcactttctctccAAAGAACTTCATATAGAGATGGCAGCTGCAACATCTGGTGCTGTGTTAAATGGGTTGGGATCTTCCTTCTTGAGTGGAGGAAACAGGAGTCAAACCCTTCTGGCCACTGCTATTGGAGGCAAAGTTGGTACTGCTGTTAGTCCTAGAAGACTCATTGTGGCAGCTGCTGCTGCACCAAAGAAGTCATGGCTCCCTGGTGTTAGAGGTGGTGGGAATTTCGTTGACCCAGAATGGCTTGATGGATCGCTACCAGGTGACTATGGTTTTGACCCACTAGGCCTTGGCAAGGACCCAGCATTCCTCAGATGGTACAGAGAAGCTGAACTCATTCATGGGAGGTGGGCAATGGCCGCAGTTGTAGGCATCTTTGTGGGGCAGGCCTGGAGTGGAGTGCCATGGTTTGAGGCTGGAGCTGACCCCAATGCAATTGCTCCTTTCTCCTTTGGTTCTCTTTTGGGAACCCAGTTGTTTCTCATGGGGTGGGTTGAGAGCAAGAGATGGGTGGACTTCTTCAACCCAGACTCACAGTCACTGGAATGGGCCACTCCATGGTCAAGAACAGCTGAGAACTTTGCCAATGCCACTGGTGACCAAGGCTACCCAGGAGGCAAATTCTTTGACCCTTTGGGCCTTGCTGGCACTATCCAGAATGGAGTTTACATTCCGGATAGAGACAAGCTAGAAAGATTGAAATTGGCTGAGATTAAGCATGCCAGGATTGCTATGTTGGCCATGCTGATTTTCTACTTTGAGGCTGGACAAGGGAAGACTCCCCTTGGCGCTCTTGGCTTGTAA 912 0.4846 MRTPLDFLPLHIHSHIKSLQVVHLQSNLQKQPLFSHFLSKELHIEMAAATSGAVLNGLGSSFLSGGNRSQTLLATAIGGKVGTAVSPRRLIVAAAAAPKKSWLPGVRGGGNFVDPEWLDGSLPGDYGFDPLGLGKDPAFLRWYREAELIHGRWAMAAVVGIFVGQAWSGVPWFEAGADPNAIAPFSFGSLLGTQLFLMGWVESKRWVDFFNPDSQSLEWATPWSRTAENFANATGDQGYPGGKFFDPLGLAGTIQNGVYIPDRDKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0176 303 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 46 303 IPR001344 GO:0009765|GO:0016020
Ssu1g0176 303 SUPERFAMILY Chlorophyll a-b binding protein 113 303 - -
Ssu1g0176 303 Gene3D Chlorophyll a/b binding protein domain 115 301 - -
Ssu1g0176 303 Pfam Chlorophyll A-B binding protein 115 291 IPR022796 -
Ssu1g0176 303 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP24 10A, CHLOROPLASTIC 46 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0176 Ssu-Chr1 4663178 4664495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0176 46 303 Chloroplast and Mitochondria Gene Families AT1G15820 81.853 3.29e-152 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0176 K08917 - gmx:100500118 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1949 5 56698337 56699011 Ssu1g0176 1 4663178 4664495 PCT