Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0172 ATGGATGTTCTAACCTTAAGCTCAAGTCTTAGCATTTCCAAgccatttcatttcatttcactcTCAAAGAAACAGCAAAGACCTCCTCGTACGCAGTTTGCTGTTTCATGCGTAGCCACGAAGCAGCTTCAAAGCGTTGACGACAACTTCTACAAGGTACTATGTTTGAGTCCCAACAGTGCAACCACGGATGACATAAAGAAAGCGTATAGATCAATGGCTCTTCGGTACCACCCTGACGTGTGCCATGATAGTTCCAAGAAAGAGGAATCAACGAGGATGTTTGTGCAACTCAACGCGGCTTACAGGACGCTGTCGAATCCAATGCTTCGAGCAGAGTATGACTGTGAATTGGGTTTGAGAAGCGGAATGAGCGTTGGTGATGAGAGTTGGAGATGTAGGTGGCAGGAGCAAGTGGCTGAGTTGAAGAGAAGGTCTCGCAGACGTATGGCACAAAAGGAGGGATCGTGGGGCAGTAAAATGAGGGCGCAAAACATGGAATGA 504 0.4544 MDVLTLSSSLSISKPFHFISLSKKQQRPPRTQFAVSCVATKQLQSVDDNFYKVLCLSPNSATTDDIKKAYRSMALRYHPDVCHDSSKKEESTRMFVQLNAAYRTLSNPMLRAEYDCELGLRSGMSVGDESWRCRWQEQVAELKRRSRRRMAQKEGSWGSKMRAQNME 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0172 167 SUPERFAMILY Chaperone J-domain 44 118 IPR036869 -
Ssu1g0172 167 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 3 166 - -
Ssu1g0172 167 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 3 166 - -
Ssu1g0172 167 MobiDBLite consensus disorder prediction 146 167 - -
Ssu1g0172 167 CDD DnaJ 49 107 IPR001623 -
Ssu1g0172 167 ProSiteProfiles dnaJ domain profile. 49 118 IPR001623 -
Ssu1g0172 167 PRINTS DnaJ domain signature 52 70 IPR001623 -
Ssu1g0172 167 PRINTS DnaJ domain signature 70 85 IPR001623 -
Ssu1g0172 167 PRINTS DnaJ domain signature 90 110 IPR001623 -
Ssu1g0172 167 Pfam DnaJ domain 49 115 IPR001623 -
Ssu1g0172 167 SMART dnaj_3 48 110 IPR001623 -
Ssu1g0172 167 Gene3D DnaJ domain 35 147 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0172 Ssu-Chr1 4584966 4585469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0172 51 115 C2H2 Transcription Factor Family AT1G74250 40.299 1.46e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0172 - - gmx:100783590 249.21