Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0171 ATGGGGGAAAAGGAAATAAGAAGCGGGTCTTCTTCACGTCGACATGGAGATGCTTTGCCTCATATTCACAAGGACATTGCATACGCAAAGCTTGCAAATTTGGATCCCCAATATGGACTATACACCAGTTTTGTGGCTCCTCTTGTCTATGCTTTCATGGGAAGCTCAAGAGATATTGCCATAGGACCCGTAGCTGTGGTGTCCCTCTTGCTTGGGACTATGCTATCCGATGAGATTAGTAACTACAAAAGTCATGAATACCTGCGTCTCGCATTTACTGCCACCTTCTTCGCAGGAATCACTCAAATGGCACTTGGTGTTCTCAGGCTTGGTTTCTTGATTGACTTTTTGTCTCATGCTGCCATTGTGGGATTCATGGCTGGAGCTGCCATTACTATTGCACTGCAACAGCTTAAGGGTCTTCTTGGCATACAAAATTTCACTAAGAAAACTGATGTTGTTTCTGTCATGCGCTCGGTTTGGAGTACAGTACACCATGGGtGGAATTGGGAGACAATAGTCATTGGATTATCATTCTTGGTTTTCCTTCTTATAACCAAGTATATTgctaaaaagaataagaaactCTTTTGGGTGGCTGCAATTTCTCCTATGATCTCTGTTATAGTGTCTACCTTTTTTGTCTACATTACCAGGGCAGACAAGAAAGGCGTGGCAACTGTGACACATATTAAGAAGGGTGTGAATCCATCATCTGCTAGTGAGATTTTTTTCAGTGGAAAATATCTGGGTCCTGGTATCCGGATTGGTGTGGTAGCTGGTATGGTAGCACTCACAGAAGCCGTAGCGATTGGGAGAACATTTGCTGCCGTGAAAGACTATTCACTGGATGGTAACAAAGAAATGGTGGCAATGGGAGCAATGAACATTATTGGTTCGCTAACATCTTGTTATGTGGCTACAGGATCTTTTTCTCGCTCAGCAGTGAACTTCATGGCTGGTTGTAAAACTGCTGTATCAAACATCGTTATGTCCATTGTTGTATTGTTAACACTGATACTCATTACGCCACTATTTAAGTACACTCCAAATGCGGTGCTTGCTTCTATTATAATAGCTGCCGTGATTGGCCTTGTGAACATTGAAGCAATTATTCTGCTGTGGAAGATTGACAAATTCGATTTTGTTGCTTGCATGGGAGCCCTCTTTGGTGTGATCTTCAAGAGTGTTGAGATTGGCCTTCTAATTGCGGTGGCTATATCTTTTGCCAAAATCCTTTTACAAGTGACAAGGCCAAGGACTGCAGTACTAGGAAAACTTCCAGGGACTACTATTTATAGGAACATCCAACAATACCCCAAAGCAACCCAAATTAATGGCATGCTGATCATCAGGGTTGACTCTGCTATCTACTTCTCAAACTCGAACTATATCAAGGAGAGAATTTTGAGATGGCTGACTGATGAAGAAGGCCAAAGGAAAACGAGTGGCTTGTCCAGAATAGAGTATCTCACTGTTGAAATGTCACCTGTTACTGATATTGACACTAGTGGCATCCATGCTTTTGAAGAGTTATATAAGAGCCTTCAGAAAAGAGAAGTCcagCTTATCTTGGCAAACCCAGGGCCAATTGTAATGGAGAAGCTCCACGCATCCAAGTTCACAGATTTAATTGGCGACGACAAAATATTTCTAACAGTGGCTGATGCTGTTTCAACTTTTGGTCCAAAGGGTGAAGGAGTAGTATGA 1710 0.4193 MGEKEIRSGSSSRRHGDALPHIHKDIAYAKLANLDPQYGLYTSFVAPLVYAFMGSSRDIAIGPVAVVSLLLGTMLSDEISNYKSHEYLRLAFTATFFAGITQMALGVLRLGFLIDFLSHAAIVGFMAGAAITIALQQLKGLLGIQNFTKKTDVVSVMRSVWSTVHHGWNWETIVIGLSFLVFLLITKYIAKKNKKLFWVAAISPMISVIVSTFFVYITRADKKGVATVTHIKKGVNPSSASEIFFSGKYLGPGIRIGVVAGMVALTEAVAIGRTFAAVKDYSLDGNKEMVAMGAMNIIGSLTSCYVATGSFSRSAVNFMAGCKTAVSNIVMSIVVLLTLILITPLFKYTPNAVLASIIIAAVIGLVNIEAIILLWKIDKFDFVACMGALFGVIFKSVEIGLLIAVAISFAKILLQVTRPRTAVLGKLPGTTIYRNIQQYPKATQINGMLIIRVDSAIYFSNSNYIKERILRWLTDEEGQRKTSGLSRIEYLTVEMSPVTDIDTSGIHAFEELYKSLQKREVQLILANPGPIVMEKLHASKFTDLIGDDKIFLTVADAVSTFGPKGEGVV 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0171 569 Pfam Sulfate permease family 22 386 IPR011547 GO:0016021
Ssu1g0171 569 ProSiteProfiles STAS domain profile. 438 561 IPR002645 -
Ssu1g0171 569 PANTHER SULFATE TRANSPORTER 22 566 IPR001902 GO:0015301|GO:0016020|GO:0055085
Ssu1g0171 569 Pfam STAS domain 439 557 IPR002645 -
Ssu1g0171 569 PANTHER HIGH AFFINITY SULFATE TRANSPORTER 22 566 - -
Ssu1g0171 569 SUPERFAMILY SpoIIaa-like 440 562 IPR036513 -
Ssu1g0171 569 CDD STAS_SulP_like_sulfate_transporter 439 554 - -
Ssu1g0171 569 ProSitePatterns SLC26A transporters signature. 36 57 IPR018045 GO:0008271|GO:0008272
Ssu1g0171 569 Gene3D STAS domain 418 562 IPR036513 -
Ssu1g0171 569 TIGRFAM sulP: sulfate permease 24 557 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0171 Ssu-Chr1 4571024 4575145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0171 22 564 Inorganic Solute Cotransporters AT1G22150 75.368 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0171 K17470 - gmx:100784124 947.962