Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0167 ATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGACTTCGTGGTTTTTGTATGACACCTACAGAACGGTTGCTTGTGTATCCATTCATGGCTAATGGAAGCGTAGCATCATGTTTACGAGAACGTCAAGAATCCCAACCACCACTTGGCTGGCCAATAAGGAAGTGTATTGCACTGGGATCTGCAAGGGGGCTTGCTTATTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCTGCAAATATATTGTTGGATGAGGAATTTGAAGCAGTCGTCGGAGATTTTGGTTTAGCAAAACTTATGGATTATAAAGATACTCATGTTACTACTGCTGTTCGTGGAACAATTGGCCATATAGCACCTGAGTATCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTCGAACTAATAACTGGACAAAGGGCTTTTGATCTAGCTCGACTTGccaatgatgatgatgtgatGTTGCTTGATTGGGTTAAAGGCCTTCTTAAAGACAGGAAATTGGAAATGCTGGTAGATGCAGATTTACAGGGCAATTATAATGATGACGAGGTAGAGCAGTTAATCCAAGTGGCCTTACTATGCACACAAGGCTCTCCTATGGAAAGACCAAAGATGTCAGAGGTGGTCAGAATGCTAGAAGGTGATGGTTTGGCCGAAAAATGGGAGCAATGGCAGAAAGATGAGACGTTCCGGCAAGACTTTAACAACAACATGCATCACCCTAATGCAAATTGGATAGTAGATTCAACTTCCCATATCCAGCCAGATGAACTATCTGGTCCTAGATGA 834 0.4149 MISMAVHRNLLRLRGFCMTPTERLLVYPFMANGSVASCLRERQESQPPLGWPIRKCIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDRKLEMLVDADLQGNYNDDEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKDETFRQDFNNNMHHPNANWIVDSTSHIQPDELSGPR 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0167 277 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Ssu1g0167 277 PIRSF ILK 1 249 - -
Ssu1g0167 277 SUPERFAMILY Protein kinase-like (PK-like) 5 228 IPR011009 -
Ssu1g0167 277 ProSiteProfiles Protein kinase domain profile. 1 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0167 277 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1-RELATED 1 277 - -
Ssu1g0167 277 SMART serkin_6 1 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0167 277 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 277 - -
Ssu1g0167 277 Pfam Protein tyrosine and serine/threonine kinase 4 227 IPR001245 GO:0004672|GO:0006468
Ssu1g0167 277 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Ssu1g0167 277 Gene3D Transferase(Phosphotransferase) domain 1 31 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0167 Ssu-Chr1 4491207 4492998 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0167 1 277 Receptor kinase-like Gene Family AT4G33430 88.530 4.59e-179 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Ssu1g0167 PK_Tyr_Ser-Thr 1.8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0167 K13416 - gmx:100800522 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1954 5 56760901 56795896 Ssu1g0167 1 4491207 4492998 PCT