Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0154 ATGCACcggaatgagaaggatccagaggttgtgcagagaaaacctAAAGCACAAATCTATACACAAACCAAGGTAGAAGAACACCAATGCCAAACCCTCAAAGGTCATCGACTTTACGCCAACAACTGTGGCTTATTTGATAGCCCCGCCACTATGAATTTTTGCACCAAATGCTATGATGTGATCCATTTGAAGGAACAAGAAAAAATGTCCACCAAATCCCCCATTGAAATCACTTTCTTTTCCTCTGAGAAGCCATTGTTGTCAACATTACTGATTTTGTTGGTGAAGGAAGGCACTGCAAACTAA 309 0.3528 MHRNEKDPEVVQRKPKAQIYTQTKVEEHQCQTLKGHRLYANNCGLFDSPATMNFCTKCYDVIHLKEQEKMSTKSPIEITFFSSEKPLLSTLLILLVKEGTAN 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0154 102 Gene3D - 23 86 - -
Ssu1g0154 102 PANTHER AN1-TYPE ZINC FINGER PROTEIN 25 80 - -
Ssu1g0154 102 PANTHER BNAC06G14100D PROTEIN 25 80 - -
Ssu1g0154 102 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 40 82 - -
Ssu1g0154 102 Pfam A20-like zinc finger 40 59 IPR002653 GO:0003677|GO:0008270
Ssu1g0154 102 ProSiteProfiles Zinc finger A20-type profile. 24 67 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0154 Ssu-Chr1 3942112 3942948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0154 25 64 C2H2 Transcription Factor Family AT3G52800 52.500 2.39e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0154 - - bhj:120073734 81.2629