Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0153 ATGGCTTCCGCTGCGGCAGGTGCAACCAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCGCGTGAAGGGGAGAGAGTTTATTACTTCCCGCAAGGTCATATGGAACAGctcGAGGCATCTATGAATCAGGGATTGGAGCAGCAAATGCCTTCCTTTAATCTGccttctaaaatattatgtaaagtgGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGAAGCAGATCAAAGCGAGGTGACAAGCCCTGACGATCCTCTGGCTGAACCTCCAAGGTGTACACTCCATTCATTTTGCAAGACACTCACTGCTTCTGACACTAGCACTCATGGAGGTTTCTCCGTTCTTCGAAGACATGCAGATGATTGTCTGCCTCCACTGGATATGACTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATCTGCATGGGAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAGGCGCCACTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGTTGCGAGTTGGAGTTAGGAGGCTCATGAGACAGCAAAGCAACATGCCATCTTCTGTTATATCCAGTCACAGTATGCATCTGGGTGTTCTGGCCACTGCTTCTCACGCCATTGCCACTGGAACGCTGTTTTCTGTATTTTACAAGCCCAGAACAAGCCGGTCTGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCTCGAAGTCATAAACTTTCCGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGACGAAGTTCCTGAAAGAAGGTTCAGTGGTACAATTGTGGGTGTTGGAGATAATAAATCGTCAGTCTGGGCTGATTCTGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCCTCATCTATTTTGCGTCCTGATAGAGTTTCTTCATGGGAATTGGAGCCACTTGTGTCTACCCCTCCTACAAACTCCCAGCCATCCCAAAGAAACAAGAGATCGCGACCTCCCATTCTACCTTCAACAATGCCTGATTCTTCTGTACAAGGCGTATGGAAATCACCAGTTGAATCTGCACCTTTCTCTTATCGTGACCATCAACATGGGCGAGATGTCTATCCATCACCCAAATTCAATTCCCCTGCAAATGGCTTTCTTGGTGTTGGTGGGAATTGCTCTGCTTCCAACAAGTCAATATATTGGTCTAGTAGGATGGAAAACTCTACAGAATCTTTTTCACCTGTTGCACTTCAAGAATCTGGAGAGAAGAGACAAGGGACTGGAAATGGCTGTAGGCTCTTCGGGATTCAGTTACTTGAGAATTCTAATGGAGAAGAAAGTCTACCAATGGTTACTTTGTCAGGAAGGGTGGGTGATGATGGCCCCCTTCCATCTTTGGATGCTGAGTCTGATCAGCATTCTGAACCATCCAATGTTAATCGATCTGATATCCCTTCGGTAAGCTGTGATGCTGAAAAGTCATGCCTGCAGTCTCCCCAGGAGTCACAGAGCAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACACGGTTTGATGGATATGAGGATCTGCTAAGGAAATTAGAAGAGATGTTTGACATCAAGGGTGAGCTCTGTGGATCTGCAAAAAAATGGCAGGTTGTGTACACTGATAATGAAGatgatatgatgatggttgGGGATGATCCATGGCTTGAATTTTGTAGCATTGTGAGGAAAATTTTCATCTACACTGCAGAGGAGGTAAAGAAGCTGTCACCCAAAATAGGACTTCCAATCAATGAAGAACTTAAACCTAGCAAAATGGATTCTGAAGCAGTAGTCAATCCTGAGGACCAGTGGTCTATTGTGGGGCCTGGTTGCTAA 1995 0.4426 MASAAAGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLAEPPRCTLHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEARSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSSVWADSEWRSLKVQWDEPSSILRPDRVSSWELEPLVSTPPTNSQPSQRNKRSRPPILPSTMPDSSVQGVWKSPVESAPFSYRDHQHGRDVYPSPKFNSPANGFLGVGGNCSASNKSIYWSSRMENSTESFSPVALQESGEKRQGTGNGCRLFGIQLLENSNGEESLPMVTLSGRVGDDGPLPSLDAESDQHSEPSNVNRSDIPSVSCDAEKSCLQSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKGELCGSAKKWQVVYTDNEDDMMMVGDDPWLEFCSIVRKIFIYTAEEVKKLSPKIGLPINEELKPSKMDSEAVVNPEDQWSIVGPGC 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0153 664 Pfam Auxin response factor 244 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu1g0153 664 MobiDBLite consensus disorder prediction 348 383 - -
Ssu1g0153 664 Pfam B3 DNA binding domain 118 218 IPR003340 GO:0003677
Ssu1g0153 664 ProSiteProfiles PB1 domain profile. 540 633 IPR000270 GO:0005515
Ssu1g0153 664 SMART B3_2 118 220 IPR003340 GO:0003677
Ssu1g0153 664 PANTHER AUXIN RESPONSE FACTOR 9 5 641 - -
Ssu1g0153 664 Gene3D - 281 353 - -
Ssu1g0153 664 MobiDBLite consensus disorder prediction 484 517 - -
Ssu1g0153 664 Gene3D - 115 220 IPR015300 -
Ssu1g0153 664 Gene3D - 535 629 - -
Ssu1g0153 664 MobiDBLite consensus disorder prediction 502 517 - -
Ssu1g0153 664 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Ssu1g0153 664 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 641 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu1g0153 664 SUPERFAMILY DNA-binding pseudobarrel domain 106 247 IPR015300 -
Ssu1g0153 664 SUPERFAMILY CAD & PB1 domains 542 617 - -
Ssu1g0153 664 CDD B3_DNA 116 218 IPR003340 GO:0003677
Ssu1g0153 664 Pfam AUX/IAA family 535 630 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0153 Ssu-Chr1 3918544 3924421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0153 6 654 B3 DNA Binding Superfamily AT1G59750 72.783 0.0 947
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu1g0153 AUX_IAA 1.3e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0153 K14486 - gmx:100793224 1290.4