Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0146 ATGGGTGGAAATGCAATATGCCAATGGGTGTGGCCTAGACCCAGTGAATGGGTTAAGGGCAAACCGGTTGGAGGTGGGTCTTTTGGCACCGTCCATTTGGCAATGAACAAATCCACCGGTAGgctttttgttgtgaaatcACCACATTCCGGGGCTGGACGCGAGGCTTTGGATAGAGAGGTCAATATCCTAAAGACTTTAAATTCATCGCCGTATATTGTCCAATGTTTGGGGACGGAGGAGGACCAAGGAGGCACACTCAATGTTTTTATGGAGTATATGGCTGGGGGTAGTTTGGCAGAGGTGGCGCACAAGTTTGGCGGGTCATTAGATGAAGAGGTGGTTCGGGTGTACACCAGAGAAATTCTTCATGGGTTAAAGCATCTTCACCAACATGGAATTGTGCATTGCGACCTTAAGTGCAAGAACGTGCTTTTGGACTCATCTGGCAACATCAAGTTGGCGGACTTTGGATGTGCAAAAAGGGCAAATTGTTGGCGGTCTATTGGATTTGGAGGGACTCCTCTGTGGATGGCTCCTGAAGGATTGAGGAATGAATCGCTGGATTTTGCTGCAGATGTATGGTCCTTGGGATGTACAGTCATTGAGATGGCTACTGGCAAGCCTCCTTGGGCTCATCAGGTTTCAAATCCTATAACTGCTGTACTCAGGATTGCCCATGGTGATGGGATACCTCAGTTTCCACCCCATTTCTCTACGGAGGGTTTGGATTTCTTGAGCAGGTGCTTGCAGAGAGAACCCAATAAGAGGTGTACGGTCGAGGAGTTACTTAGCCATCCATTTGTTTCCACGAGACCTTCTCACCAACAATATGCTTCTTCACCAGCAAGTGTCTTGGAGGTTCAAAATTTCAGAGATACTTACGATTTAGATGAATTAGAAAGTTCAGAGGGGAATAATTTCTCAATCACAAACTCATTTGCATGTCATCGTGATGATCCGAAAGGAATAGCAATGTGTAAACAGGAAGACACCGCATTGGGGTCATCAGGAAATTGGATTACTGTTAGATCCGGCTGA 1041 0.4592 MGGNAICQWVWPRPSEWVKGKPVGGGSFGTVHLAMNKSTGRLFVVKSPHSGAGREALDREVNILKTLNSSPYIVQCLGTEEDQGGTLNVFMEYMAGGSLAEVAHKFGGSLDEEVVRVYTREILHGLKHLHQHGIVHCDLKCKNVLLDSSGNIKLADFGCAKRANCWRSIGFGGTPLWMAPEGLRNESLDFAADVWSLGCTVIEMATGKPPWAHQVSNPITAVLRIAHGDGIPQFPPHFSTEGLDFLSRCLQREPNKRCTVEELLSHPFVSTRPSHQQYASSPASVLEVQNFRDTYDLDELESSEGNNFSITNSFACHRDDPKGIAMCKQEDTALGSSGNWITVRSG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0146 346 SMART serkin_6 17 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0146 346 SUPERFAMILY Protein kinase-like (PK-like) 9 308 IPR011009 -
Ssu1g0146 346 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 12 345 - -
Ssu1g0146 346 CDD STKc_MAPKKK 16 269 - -
Ssu1g0146 346 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Ssu1g0146 346 ProSiteProfiles Protein kinase domain profile. 17 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0146 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Ssu1g0146 346 Gene3D Transferase(Phosphotransferase) domain 1 15 326 - -
Ssu1g0146 346 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE 12 345 - -
Ssu1g0146 346 Pfam Protein kinase domain 19 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0146 Ssu-Chr1 3839555 3840595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0146 16 300 MAP Kinase Kinase Kinase AT2G32510 39.297 1.12e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu1g0146 Pkinase 8.7e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0146 K20716 - gmx:100798237 525.013