Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0145 ATGGGAAGGAAAAAGACAGAGGATGCAGGCCCATCTGCAAAGGCTAAGGCTAGCAAAGATGCttctaagaaggaaaaattttctGTCTCTGCCATGCTGGCCAGTATGGATGAAAAGCCTGATAAACCTAAAAAAGTCTCTTCTTCCTCCAGTAAGCCGAAGCCAAAATCTGCTCCAAAAGCTTCCACATACACTGATGGTATTGATCTTCCTCCATCTGACGATGAAGATGATGATCCCTTGAAAGAGGAGGAACAGCAAAATAATGTGTCCAAACGGTCCAGTCAGCAGCAAAGACCTGATTTGAAGCCACTTGAAGTGTCTATAGCTGACAAAGAGTTGAAGAAGCGTGAAAAGAAGGATCTTTTAGCTGCCCATGCTGCTGAGCAAGCAAAGAAGGAAGCTCTTAAGGATGATCATGATGCTTTCACTGTGGTCATCGGAAGCCGGGCTTCAGTGCTTGATGGAGAAGATGATGCTGATGCTAATGTCAAAGATAtaacaatagaaaatttctCTGTGTCTGCTCGGGGTAAAGAACTTCTGAAGAATGCATCAGTGAGGATATCTCATGGGAAGAGGTATGGTTTGGTTGGGCCCAATGGAAAAGGCAAGTCCACTCTGTTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGATAAAACAGCACTTGAAGCTGTTGTTTCAGCTAATGATGAACTTGTTAAAATTCGACAAGAAGTTACCTCTCTGCAGAATGCAACTTCTGTTGAAGAAAGTGTAGACAAAGATAATGACGAGGAAGATGATACAGGAGAGAAGCTAGCAGAGCTATATGACAAACTACAGCTGATGGGATCTGATGCTGCTGAAGCTCAGGCATCAAAGATTTTAGCTGGTTTGGGTTTTTCAAAGGATATGCAAGGCCGTCCTACAAAATCCTTTAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAACCAACTCTATTATTGCTTGATGAACCCACAAATCATCTTGACCTGAGAGCTGTTCTCTGGTTGGAAGAGTATTTGTGCCGTTGGAAGAAAACATTGGTGGTTGTCTCACATGATAGGGATTTTCTCAATACAGTGTGTACTGAGATTATTCATCTCCATGATTTGAAACTTCATTTCTATCGGggaaattttgatgattttgagaGTGGGTATGAACAGCGTCGTAAAGAGATGAATAAGAAGTATGAGATTTATGACAAGCAATTGAAAGCAGCTAAAAGGAGTGGAAATCGGGCTCAACAAGAAAAGGTTAAGGATCGAGCTAAGTTTGCAGCAGCTAAGGAAGCATCTAAAAGCAAGGGCAAGGGCAAGGTTGATGAGGATGAGGCCTCACTAGAGGTACCTCAGAAGTGGAGAGATTACAGTGTGGAGTTCCACTTTCCTGAACCTACTGAGCTCACACCTCCACTTCTGCAGCTTGTTGAAGTCAGCTTTAGCTACCCAAACCGTGAGGATTTCAAGCTCTCAAATGTAGATGTTGGCATTGACATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACGTTGCTGAATCTTCTGGCTGGTGATTTGGTTCCTTCTGAGGGTGAACTTCGAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCACAACACTTTGTGGACCTTCTAACAATGGATGAAACACCTGTGCAGTATCTTCTCCGGCTCCATCCAGATCAGGAGGGACTTAGCAAGCAGGAGGCTGTCCGTGCAAAACTTGGTAAGTTTGGGCTACCAAGTCATAACCATCTTACTCCTATTGCCAAACTATCAGGAGGGCAGAAAGCTCGGGTGGTCTTCACATCAATCTCCATGTCAAAACCACACATTTTATTGTTAGATGAACCCACCAATCATCTGGACATGCAAAGTATTGATGCATTGGCTGATGCATTGGATGAATTCACCGGTGGAGTTGTTCTTGTTAGTCATGATTCAAGATTGATATCACGTGTATGTGAGGATGAAGAAAGGAGTCAAATCTGGGTTGTCGAGGATGGTACTGTCAAAACTTTCCCAGGAACATTTGAGGATTACAAGGAAGATTTGCTGAGAGAGATTAAAACTGAAGTTGATGACTGA 2181 0.4255 MGRKKTEDAGPSAKAKASKDASKKEKFSVSAMLASMDEKPDKPKKVSSSSSKPKPKSAPKASTYTDGIDLPPSDDEDDDPLKEEEQQNNVSKRSSQQQRPDLKPLEVSIADKELKKREKKDLLAAHAAEQAKKEALKDDHDAFTVVIGSRASVLDGEDDADANVKDITIENFSVSARGKELLKNASVRISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANDELVKIRQEVTSLQNATSVEESVDKDNDEEDDTGEKLAELYDKLQLMGSDAAEAQASKILAGLGFSKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGNRAQQEKVKDRAKFAAAKEASKSKGKGKVDEDEASLEVPQKWRDYSVEFHFPEPTELTPPLLQLVEVSFSYPNREDFKLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGELRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEDGTVKTFPGTFEDYKEDLLREIKTEVDD 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0145 726 ProSitePatterns ABC transporters family signature. 324 338 IPR017871 GO:0005524
Ssu1g0145 726 Gene3D - 463 725 IPR027417 -
Ssu1g0145 726 Coils Coil 243 263 - -
Ssu1g0145 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 404 IPR027417 -
Ssu1g0145 726 Pfam ABC transporter 516 651 IPR003439 GO:0005524
Ssu1g0145 726 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 5 726 - -
Ssu1g0145 726 Coils Coil 119 139 - -
Ssu1g0145 726 CDD ABCF_EF-3 167 397 - -
Ssu1g0145 726 Pfam ABC transporter 182 352 IPR003439 GO:0005524
Ssu1g0145 726 MobiDBLite consensus disorder prediction 1 110 - -
Ssu1g0145 726 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 499 724 IPR003439 GO:0005524
Ssu1g0145 726 SMART AAA_5 525 701 IPR003593 -
Ssu1g0145 726 SMART AAA_5 191 396 IPR003593 -
Ssu1g0145 726 Gene3D - 164 449 IPR027417 -
Ssu1g0145 726 MobiDBLite consensus disorder prediction 433 469 - -
Ssu1g0145 726 MobiDBLite consensus disorder prediction 1 26 - -
Ssu1g0145 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 712 IPR027417 -
Ssu1g0145 726 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 167 427 IPR003439 GO:0005524
Ssu1g0145 726 PANTHER - 5 726 - -
Ssu1g0145 726 Coils Coil 416 436 - -
Ssu1g0145 726 CDD ABCF_EF-3 499 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0145 Ssu-Chr1 3820919 3823099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0145 499 702 Calmodulin-binding Proteins AT2G36910 27.803 1.25e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0145 K06184 - gmx:100806865 1197.57