Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0143 ATGGGTTGTATATGCTCGAAAGGAAAATCCACAGACGAATATGTTGGTGAAAACCATGCGAAAGAATTGAAGGGCAATAGATCCTCGAACTCGAAGCATTTGGGGTTGGGGAGGGGAGTAACAGAGAATGATGCCACCGCTCGCCTCATATCCAATGGCAATGGAACTGGAACGGAAGGGTCCACCCCCGTACCATCCTCGGATGAACATGAAGGGGACAAGAATGGCATTGCCATTGCCATTGCCATTGCCAATGGGAATGGAATGGGATCAACGGGACCGGGACAGGGACAGGGACAGGGACAGGGACAAGGACAGGGACAAGGACAGCAACCTCAACCTAGGGTGACTAGGGTATTTAGTGTAACCCGAGGGGAAAGAGGAGCACAGGTTCTTGCTGGCTGGCCCTCTTGGCTCACTGCAGTTGCTGGCGAAGCCATTAGCGGTTGGATACCTCGCAGGGCTGACTCCTTTGAGAAGTTGGATAAGGCAACAAAGCTTCCTATCATACTGCAGATTGGGCAAGGAACTTACAGCAGTGTTTATAGAGCTCGTGAtcttgaaacaaataaaattgttgcGTTGAAGAAGGTTCGATTTGCTAATATGGATCCAGAAAGTGTTCGTTTTATGTCAAGAGAAATTATTGTGCTCCGAAGGCTTGATCATCCAAATGTCATGAAGCTTGAAGGCATGATTACTTCAAGGGTTTCTGGTAGCTTGtaccttatttttgaatatatggaGCATGATCTTGCAGGGCTTGCATCAATACCTGGCATCAAATTTACCGAAGCACAGATCAAGTGTTACATGCAACAACTTCTTCACGGTCTTGAGCATTGTCACAGTCGTGGTGTTATGCACCGTGACATCAAGGGCTCAAATCTTCTGCTTGACAGTAATGGCAATCTGAAGATTGGTGATTTTGGGCTTGCAACTTTGTTTCAGCCATCTCGCTGGCAGCCTTTAACAAGTCGTGTAGTAACCTTGTGGTACCGACCACCTGAACTTTTACTTGGAGCTACAGATTATGGAGTTGCTGTGGATTTGTGGAGTGCTGGATGTATTCTTGCAGAGTTGTTTGTTGGGAAGCCTATAATGCCTGGACGAACAGAGGTGGAGCAACTTCATAAAATCTTCAAACTTTGTGGATCTCCTTCTGAAGAATACTGGAAGAAGTCAAAGCTACCACATGCAACTGTTTTTAAACCTCAACAACCTTACAAATGTGTTGTTTCTCAGACATTCAAGGATTTTCCTTCATCTGCGCTGAGCCTCGTGGATGTCCTTCTTGCTGTAGAACCAGAAGATCGAGGAACTGCATCTTTAGCACTTCAGCATGAGTTCTTCACAGCAAATCCACTTCCTTGTGATCCATCAACTTTGCCAAAGTACCCACCGAGTAAGGAGTTTGATGCCAAACTTCGCGAAGAGGAAGCTAGAAGACGAAGAGCAGAAAATAAAGGACATGAACATGAATCGGTTGGGAGAAATTTTAGAGAGTATAAAGCTGTGCCGATACCTGATGCTAATGCTGAGTTTCAGGCAACCATGGGGGTACTTTAA 1569 0.4487 MGCICSKGKSTDEYVGENHAKELKGNRSSNSKHLGLGRGVTENDATARLISNGNGTGTEGSTPVPSSDEHEGDKNGIAIAIAIANGNGMGSTGPGQGQGQGQGQGQGQGQQPQPRVTRVFSVTRGERGAQVLAGWPSWLTAVAGEAISGWIPRRADSFEKLDKATKLPIILQIGQGTYSSVYRARDLETNKIVALKKVRFANMDPESVRFMSREIIVLRRLDHPNVMKLEGMITSRVSGSLYLIFEYMEHDLAGLASIPGIKFTEAQIKCYMQQLLHGLEHCHSRGVMHRDIKGSNLLLDSNGNLKIGDFGLATLFQPSRWQPLTSRVVTLWYRPPELLLGATDYGVAVDLWSAGCILAELFVGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATVFKPQQPYKCVVSQTFKDFPSSALSLVDVLLAVEPEDRGTASLALQHEFFTANPLPCDPSTLPKYPPSKEFDAKLREEEARRRRAENKGHEHESVGRNFREYKAVPIPDANAEFQATMGVL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0143 522 Pfam Protein kinase domain 172 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0143 522 ProSiteProfiles Protein kinase domain profile. 167 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0143 522 SUPERFAMILY Protein kinase-like (PK-like) 171 459 IPR011009 -
Ssu1g0143 522 MobiDBLite consensus disorder prediction 45 65 - -
Ssu1g0143 522 MobiDBLite consensus disorder prediction 20 72 - -
Ssu1g0143 522 PANTHER KINASE CDK9, PUTATIVE-RELATED 105 519 - -
Ssu1g0143 522 PANTHER CELL DIVISION PROTEIN KINASE 105 519 - -
Ssu1g0143 522 SMART serkin_6 167 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0143 522 Gene3D Transferase(Phosphotransferase) domain 1 255 491 - -
Ssu1g0143 522 CDD STKc_CDK9_like 169 451 - -
Ssu1g0143 522 MobiDBLite consensus disorder prediction 89 115 - -
Ssu1g0143 522 Gene3D Phosphorylase Kinase; domain 1 162 254 - -
Ssu1g0143 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Ssu1g0143 522 Coils Coil 469 496 - -
Ssu1g0143 522 MobiDBLite consensus disorder prediction 85 115 - -
Ssu1g0143 522 ProSitePatterns Protein kinases ATP-binding region signature. 173 196 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0143 Ssu-Chr1 3780911 3785081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0143 150 496 Core Cell Cycle Gene Families AT5G10270 47.425 4.11e-112 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Ssu1g0143 Pkinase 9.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0143 - - gmx:100805055 801.971