Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0137 ATGGCTCTGATCCTGCACGcaaccaaaacaaacaaaaatggtTACAAGACTCTCATTGCGGCAGAATACAGTGGGGTCCAAGTTGAATTGGCCCCTAATTTCGAGATGGGTGTCTCTAATAAAACTCCTCAATTCCTGAAGATGAATCCTCTTGGAAAGGTTCCTGTGTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGTTGCTCGATTCAAGGGTGACAACACTTTGTTCCGATCCTCTCCCATTGATAATGCCCGCATTGACCAGTGGATTGATTTTTCATCCTTGGAGATTGATGCTAATCTTATGCAATTGTACCTGCCAAGACTTGGATTTGCCCCATACCTTCCTCCAGTTGAGGAGGCTGCTAATTCTGCGTTGAAGAGAGCATTCGGGGCCTTGAACACTCACCTTGCCTCCAATACTTACCTGGTTGGCCATTCCGTTACCCTTGCTGACATCATTATGACATGCAACTTGTATTTAGGTTTCGCCCAGCTCTTAGTTAAGAGCTTCACCTCGGAGTTCCCCCATGTCGAGAGATACTTTTGGACCTTGGTCAACCAGCCTAACTTCCGAAAGATATTGGGTCAGGTCAAGCAAACTGAATCTGTTCCACCTATTCAATCCGCAAAGAAGCCTTCCCAGCCTAAGGAATCTAAGGCCAAGCCTAAGGATGAACCAAAGAAAGTGGCTAAATCAGCGCCAGAAAAgcccaaagaagaagaagcagaagAGGAGGCGCCCAAGCCCAAGCCCAAGAATCCTCTTGATCTTCTTCCTCCAAGCAAGATGATATTGGATGACTGGAAAAGACTCTACTCAAACACTAAGACCAACTTCCGCGAGGTTGCAATCAAAGGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACACTGTTTCCTTTGTGACGTTGAACAAGGTTAGTGGATTTCTTCAGCGGATGGATCTGGCTCGCAAGTATGCATTTGGAAAGATGCTTGTGATTGGATCACAGCCACCATTTAAGGTGAAGGGGTTGTGGCTTTTCCGCGGGCAAGAGATTCcacaatttgtgattgatgaaTGCTATGATATGGAGCTCTACGAATGGACCAAGGTTGTCATCTCTGATGAAACTCAGAAAGAGCGCGTCAATCAGATGATTGAGGATTATGAACCATTTGAGGGAGAGCCTCTTTTGGATGCCAAGTGCTTCAAGTGA 1263 0.4378 MALILHATKTNKNGYKTLIAAEYSGVQVELAPNFEMGVSNKTPQFLKMNPLGKVPVLETPDGPVFESNAIARYVARFKGDNTLFRSSPIDNARIDQWIDFSSLEIDANLMQLYLPRLGFAPYLPPVEEAANSALKRAFGALNTHLASNTYLVGHSVTLADIIMTCNLYLGFAQLLVKSFTSEFPHVERYFWTLVNQPNFRKILGQVKQTESVPPIQSAKKPSQPKESKAKPKDEPKKVAKSAPEKPKEEEAEEEAPKPKPKNPLDLLPPSKMILDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLVIGSQPPFKVKGLWLFRGQEIPQFVIDECYDMELYEWTKVVISDETQKERVNQMIEDYEPFEGEPLLDAKCFK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0137 420 Gene3D Glutaredoxin 1 74 - -
Ssu1g0137 420 Gene3D - 80 215 - -
Ssu1g0137 420 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 260 420 IPR001662 GO:0003746|GO:0006414
Ssu1g0137 420 MobiDBLite consensus disorder prediction 223 260 - -
Ssu1g0137 420 SUPERFAMILY eEF1-gamma domain 260 420 IPR036433 GO:0003746|GO:0006414
Ssu1g0137 420 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 215 IPR010987 -
Ssu1g0137 420 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 420 IPR044628 GO:0004364
Ssu1g0137 420 SUPERFAMILY GST C-terminal domain-like 73 214 IPR036282 -
Ssu1g0137 420 MobiDBLite consensus disorder prediction 210 268 - -
Ssu1g0137 420 PANTHER - 1 420 - -
Ssu1g0137 420 Pfam Elongation factor 1 gamma, conserved domain 259 367 IPR001662 GO:0003746|GO:0006414
Ssu1g0137 420 CDD GST_C_EF1Bgamma_like 90 210 - -
Ssu1g0137 420 SMART EF1G_2 259 367 IPR001662 GO:0003746|GO:0006414
Ssu1g0137 420 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Ssu1g0137 420 Pfam Glutathione S-transferase, C-terminal domain 127 197 IPR004046 -
Ssu1g0137 420 SFLD Glutathione Transferase (cytosolic) 5 190 IPR040079 -
Ssu1g0137 420 CDD GST_N_EF1Bgamma 5 76 - -
Ssu1g0137 420 Pfam Glutathione S-transferase, N-terminal domain 9 76 IPR004045 -
Ssu1g0137 420 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 260 420 IPR036433 GO:0003746|GO:0006414
Ssu1g0137 420 SUPERFAMILY Thioredoxin-like 2 83 IPR036249 -
Ssu1g0137 420 SFLD Main (cytGST) 5 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0137 Ssu-Chr1 3742823 3744984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0137 1 420 Eukaryotic Initiation Factors Gene Family AT1G57720 73.333 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0137 K03233 - gmx:100795680 742.651