Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0131 ATGGCGTCTGCTAGCCTTGGAAGTGGTGGGGTCGGCAGTTCGAGGTCTGCTAATGGTGCCTTCAGGGGTTCATCCAGTTCTGTCGATTGGCTTGGCAGAGAGATGCTTGAGATGAGATTGAGAGATCATGAGGACGATAGAGATAGTGAGCCTGACATCATTGATGGTGTGGGTGCTGAGACAGGACACGTCATAAGAACCAGCATTGGTGGCCGAAATGGTCAATCTAAGCAGAATGTTAGCTATATTGCAGAACATGTGGTGGGAACAGGCTCAtttggtgttgtttttcaaGCAAAATGTAGAGAAACAGGAGAGATTGTGGCCATCAAAAAGGTTCTCCAGGACAAGCGCTACAAGAACAGAGAGTTACAAATTATGCAAATGCTGGATCATCCAAATATTGTTGCCCTAAGACATTGTTTCTTTTCAACAACTGACAAAGAAGAAGTTTACCTGAATCTTGTACTTGAATATGTTCCCGAAACTGTGAATCGCATCGCAAGGAGCTATAGCAGGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAGATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGTGACATCAAACCCCAGAATCTACTTGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAGTGTTGGTGAAAGGAGAACCTAATGTTTCTTACATCTGTTCAAGATACTACCGTGCTCCGGAACTTATATTTGGGGCCACCGAATATACTACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGCCCTTGTTTCCTGGGGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAGgtTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATtatactgaatttaaatttccaCAGATAAAACCTCATCCGTGGCACAAGGTCTTTCAGAAACGTTTACCCCCTGAAGCAGTGGACCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCATTGGAAGCTTGCATTCATCCATTCTTTGATGAATTGAGGGACCCAAACACCCGCCTTCCCAATGGTCGCCCACTTCCTCCGCTGTTTAATTTTAAACCTCAGGAACTTTCTGGCATGCCCCCTGATGTCATCAATCGGCTTATTCCAGAGCATGCGCGTAAACAGAACTTATTTATGGCTTTGCACACCTAG 1263 0.4315 MASASLGSGGVGSSRSANGAFRGSSSSVDWLGREMLEMRLRDHEDDRDSEPDIIDGVGAETGHVIRTSIGGRNGQSKQNVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEEVYLNLVLEYVPETVNRIARSYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKPQELSGMPPDVINRLIPEHARKQNLFMALHT 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0131 420 PANTHER SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED 1 417 - -
Ssu1g0131 420 SMART serkin_6 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0131 420 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 417 - -
Ssu1g0131 420 MobiDBLite consensus disorder prediction 1 25 - -
Ssu1g0131 420 CDD STKc_GSK3 77 369 IPR039192 -
Ssu1g0131 420 ProSitePatterns Protein kinases ATP-binding region signature. 88 112 IPR017441 GO:0005524
Ssu1g0131 420 Gene3D Phosphorylase Kinase; domain 1 67 161 - -
Ssu1g0131 420 ProSiteProfiles Protein kinase domain profile. 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0131 420 SUPERFAMILY Protein kinase-like (PK-like) 81 394 IPR011009 -
Ssu1g0131 420 MobiDBLite consensus disorder prediction 1 26 - -
Ssu1g0131 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Ssu1g0131 420 Pfam Protein kinase domain 84 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0131 420 Gene3D Transferase(Phosphotransferase) domain 1 162 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0131 Ssu-Chr1 3677147 3682505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0131 88 374 Core Cell Cycle Gene Families AT1G76540 35.254 6.54e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Ssu1g0131 Pkinase 1.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0131 K03083 - gmx:100799387 843.958