Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0129 ATGGGGGACGAGTCGCCGAAGAATAAAGTGAAGTTCCTATGCAGCTACGGCGGCAAGGTCCTTCCACGACCCTCCGATGGCCTCCTGAGGTATGTCGGGGGCGAGACTCGTGTCGTTTCCGTTCCTCGTGACGTCAATTTTTGCGAGCTTATGAAGAAGATGAGCAGCATGGTGGAGGGGGAGATGGTGTTAAAGTACCAGCTGGTTCCGGAGGATCTGGACGCATTGGTGTCGGTTAGAACGGAGGAAGATGTGAAGCACATGATTGAGGAGCACGATCGCCACCAAACTGGCCTGCTCCGCGCTTTCCTCTTTCCTCCTTCCAAGCCGCCTTTGCTTGCCTGCGAACCCTATCTGTTAGAGCAACGTTATATCGACGCCATAAATGGCATCAACCGAACAAGCCCCAGGGCGCCCAAGGGCTCTGCCTCTCCTTCCCCTAAATCAACCTCCCCAGACGCTGccgattataataattactccCCTCGCTTTCCAAATGTAAATGCAATGCACAGAGTGCGAAGCTCTCCCAGCCTTACCAACCTTCCTGGGGATCACCACCCTCATCTTTATCCATCGTCTACCAGACCGCTCGCAAGGAAGATCGATTACCTTGCCCTCGGTGGAACCAGGCCTCCTCctcttaactattataattactCAAACACCAGACAACCCcacactcacactcacaaaGGCTATCCCTACCAAGATGATTCTGCACCCTATGCCCAACTTCCCCTTGAAAGACTCCATACTCTGCCTCGGACTCCCCCAACAAAGTCTATATGGGACTAG 798 0.505 MGDESPKNKVKFLCSYGGKVLPRPSDGLLRYVGGETRVVSVPRDVNFCELMKKMSSMVEGEMVLKYQLVPEDLDALVSVRTEEDVKHMIEEHDRHQTGLLRAFLFPPSKPPLLACEPYLLEQRYIDAINGINRTSPRAPKGSASPSPKSTSPDAADYNNYSPRFPNVNAMHRVRSSPSLTNLPGDHHPHLYPSSTRPLARKIDYLALGGTRPPPLNYYNYSNTRQPHTHTHKGYPYQDDSAPYAQLPLERLHTLPRTPPTKSIWD 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0129 265 Gene3D - 30 105 - -
Ssu1g0129 265 MobiDBLite consensus disorder prediction 135 158 - -
Ssu1g0129 265 SUPERFAMILY CAD & PB1 domains 25 112 - -
Ssu1g0129 265 SMART PB1_new 24 107 IPR000270 GO:0005515
Ssu1g0129 265 MobiDBLite consensus disorder prediction 131 158 - -
Ssu1g0129 265 PANTHER OS05G0427100 PROTEIN 4 216 - -
Ssu1g0129 265 PANTHER OS05G0427100 PROTEIN-RELATED 4 216 - -
Ssu1g0129 265 CDD PB1_UP2 13 105 - -
Ssu1g0129 265 Pfam PB1 domain 29 106 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0129 Ssu-Chr1 3657457 3658339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0129 3 156 MAP Kinase Kinase Kinase AT3G46920 42.515 4.11e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0129 - - vun:114186951 305.064