Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0111 ATGGAACTATCAGATTTGCAAAACAACAAGCAgagcagcagcaacaacaacacaGGTGGTAGTAGTGGTACTACTCATCCCCATCCGCATCTCCATCCCCACCATCACCAACAATCCTCCTCTTCCCATCTTGTGGTCCCTTTTGACGGCAGGCCAAACCCTCCTTCACCCTTCATCTCCTCCtcgtcctcctcctcctcctccacctcATCCTCCTCCAATTCATCCTCATCTTCCTCCTCCGCCTCCGCCTCCGTCTCCGCCTCCGCCCCTCCCCACCTCATCGACGCCTCCCTGGCCATCGCTACCAGATCTGACGATTCCGCCAAGAAGACAAACCAACAACTCTCCACCACCGTCGCCGCCCCCAAGCGATCCACCAAGGACAGGCACACCAAGGTGGACGGCCGCGGCCGCAGAATTCGAATGCCCGCCACCTGTGCCGCTAGGGTTTTCCAGTTGACTCGAGAATTGGGCCACAAATCCGACGGAGAGACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCGATCATCGCCGCCACCGGAACCGGAACCATCCCCGCGAATTTCTCCACCCTCAACGTGTCCCTCCGGAGCAGCGGGTCCACGCTCTCGGCCCCGCCGTCAAAGTCAGCCCCGCACACGTTTCATGGCGCGCTCGCACTCGCTCACCACCCTTACGAGGAAGCCTTCCAGCACACGGCTTTGCTAGGGTTCCACCCtcaccaccaccaacaccagcaccagcaccagcaccagcagCAACAACTTCTCTCCGCCGATCAAATCGCAGAAGCGCTTCCCAGCGGTGGCGGTGACTCCAGCGACAACTACCTCAGGAAACGCTACCGAGAAGATCTGTTCAAAGACGATAACATTAACAGCCAATCGCAGAACGAGAGCGGTGACGGGTCCTCGCCTAAAACTCCGAACCTGCAGTTACCGAAGCAACAGCAAACCGAAGCCGGTTCTGGGCTTCTTCGGGCCTCGAATTTGGTACCGGCGACAGCGATGTGGGCCGTGGCACCCGCTCCTGCCAGTGGGCCTGCTGGCAGCACAATTTGGATGCTTCCCGTGACCGCGGCTTCttctgctgctgctgctgcttcAGCTTCTGCTTCTGCGTCCGCAACTTCGGAGACTCAGATGTGGCCGTTTGCTCCTCAGTCTGGTTTCATGCCGAGGTTCAACCTTCCCAGTGCTCTTGAATTCCAAGGCGCACGTGCGGGTTCTCTACAATTGGGCTCTATGTTAATGCCGCAGCAACCTTCTCAGCATCTGGGCCTCGCCATGTCTGACTCCAACTTGGGCATGTTGGCGGCCCTTAATGCTTACACTAGGGCTGGTTTGAATATTAATTctgatcatcatcatcatcatcatcatcatcatccctTGGAGcatcaacatcaacatcaacCTACTGAGAGTGGGGAAGATGCTCCTAATAGCTCCCAATGA 1464 0.515 MELSDLQNNKQSSSNNNTGGSSGTTHPHPHLHPHHHQQSSSSHLVVPFDGRPNPPSPFISSSSSSSSSTSSSSNSSSSSSSASASVSASAPPHLIDASLAIATRSDDSAKKTNQQLSTTVAAPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHTFHGALALAHHPYEEAFQHTALLGFHPHHHQHQHQHQHQQQQLLSADQIAEALPSGGGDSSDNYLRKRYREDLFKDDNINSQSQNESGDGSSPKTPNLQLPKQQQTEAGSGLLRASNLVPATAMWAVAPAPASGPAGSTIWMLPVTAASSAAAAASASASASATSETQMWPFAPQSGFMPRFNLPSALEFQGARAGSLQLGSMLMPQQPSQHLGLAMSDSNLGMLAALNAYTRAGLNINSDHHHHHHHHHPLEHQHQHQPTESGEDAPNSSQ 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0111 487 MobiDBLite consensus disorder prediction 1 25 - -
Ssu1g0111 487 MobiDBLite consensus disorder prediction 293 324 - -
Ssu1g0111 487 MobiDBLite consensus disorder prediction 454 487 - -
Ssu1g0111 487 MobiDBLite consensus disorder prediction 287 324 - -
Ssu1g0111 487 MobiDBLite consensus disorder prediction 455 469 - -
Ssu1g0111 487 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 26 487 IPR005333 GO:0003700
Ssu1g0111 487 MobiDBLite consensus disorder prediction 124 138 - -
Ssu1g0111 487 PANTHER TRANSCRIPTION FACTOR TCP8 26 487 - -
Ssu1g0111 487 MobiDBLite consensus disorder prediction 55 88 - -
Ssu1g0111 487 Pfam TCP family transcription factor 126 262 IPR017887 -
Ssu1g0111 487 ProSiteProfiles TCP domain profile. 127 181 IPR017887 -
Ssu1g0111 487 MobiDBLite consensus disorder prediction 105 123 - -
Ssu1g0111 487 MobiDBLite consensus disorder prediction 1 90 - -
Ssu1g0111 487 MobiDBLite consensus disorder prediction 105 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0111 Ssu-Chr1 3435423 3436886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0111 124 436 TCP Transcription Factor Family AT1G35560 49.045 7.25e-71 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu1g0111 TCP 1.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0111 - - vra:106776202 647.506