Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0110 ATGGAAGAGTTTGATTATGAAGAGCTTGTAAAAGCAACAGAAAACTTCAACCCTAGAAGGATGATAGGGAAAGGAAGCCACGGCATGGTGTACAAAGGCGTTGTACTCAAAGATAAGAGGATGGTTGCTGTAAAGAAGCCATCTGAAGGCCTTCAATCTCTTGACGACAACTCCAAGCTCGAAAACGAAATCCGAGTGCTATCCTCCCTAGGCGAAAGCCCTCATGTGGTTAATCTTCTAGGAACGAGTACTCGTTCGTTGAAGAAGAACAAGCAGAAGCTCATCGTGATGGAACTCATGCCCAATGGTTCCCTCCATGACTGGCTCCATGCTGCTACCAATAAAACCCCACCCACACCCACACCCACATGGCCAAAACGCGTTGAAATCGCCATGCAAATCGCTCGTTCGGTGCAGTTTCTTCACGAAGGCAAGCCTCGGGTGATCCACAGAGACATCAAGTCCTCCAACATCTTGTTTGATTCCCACTGGAATGCTAAGTTGGCAGATTTTGGACTCGCGGTCAAAGGAGTTGACCCAGTGAGTCAACCCGCTGGGACAATAGGGTATTTGGACCCGTGTTACACCACTCCTGATAAACTCAGCACCAAAAACGACATGTTCAGCTTTGGGGTCGTGCTGTTGGAGATCGTAAGCGGTAGAAAGGCCATTGATGTGTGCAAAACGCCGGCTTCAATTGTGGAGTGGGCGATTCCGTTAATTGAACGACAACTTTTGAGAGAAATTTGCGACGCGAGAATGGCACTGCCGGGTTACATGGCTGGCACTCTCACCCACTTGTTACGCTATGCTGCGCGTTGTGTGTCACAAAATGAAGATGATCGTCCGTCAGCTGGGGAAGTTGTTACGGGAATGGAAGGTTGGTTCGTGGAACGAGTCAGGTTCCCCGTTTGGACATGCGTTTTGGTGTGGTTgagaaagaggaggaggaaACTGATCGTGAGTATTGCTGCGCAAACTCAGACACGGATTCGGTGTATAGCACAACAAGAGGGTCAGGTAGATGGTGCTGGCGTTGTTCGTGTGTCAACTGGGAAGCTGTATATCCATGACCATAAAGGAGGTTTTGGCTGA 1095 0.4822 MEEFDYEELVKATENFNPRRMIGKGSHGMVYKGVVLKDKRMVAVKKPSEGLQSLDDNSKLENEIRVLSSLGESPHVVNLLGTSTRSLKKNKQKLIVMELMPNGSLHDWLHAATNKTPPTPTPTWPKRVEIAMQIARSVQFLHEGKPRVIHRDIKSSNILFDSHWNAKLADFGLAVKGVDPVSQPAGTIGYLDPCYTTPDKLSTKNDMFSFGVVLLEIVSGRKAIDVCKTPASIVEWAIPLIERQLLREICDARMALPGYMAGTLTHLLRYAARCVSQNEDDRPSAGEVVTGMEGWFVERVRFPVWTCVLVWLRKRRRKLIVSIAAQTQTRIRCIAQQEGQVDGAGVVRVSTGKLYIHDHKGGFG 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0110 364 Gene3D Transferase(Phosphotransferase) domain 1 100 300 - -
Ssu1g0110 364 Pfam Protein kinase domain 19 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0110 364 ProSitePatterns Protein kinases ATP-binding region signature. 22 46 IPR017441 GO:0005524
Ssu1g0110 364 ProSiteProfiles Protein kinase domain profile. 16 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0110 364 Gene3D Phosphorylase Kinase; domain 1 1 99 - -
Ssu1g0110 364 PANTHER OS01G0750732 PROTEIN 1 340 - -
Ssu1g0110 364 PANTHER - 1 340 - -
Ssu1g0110 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Ssu1g0110 364 SMART serkin_6 16 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0110 364 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0110 Ssu-Chr1 3399102 3400196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0110 4 293 Receptor kinase-like Gene Family AT3G59420 43.581 9.59e-61 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Ssu1g0110 Pkinase 8.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0110 - - lang:109334080 427.172