Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0108 ATGGGTAAcatattgattttgatattcTTCTCCGTCATTGTCTCCATATCACCACCCTCTTATGGATACGATTCGTTGGATCCTTTTGGCAACATCACCATCACATGGGATTTTTTGTCCGATAATGGGGATACAGTCGATGTGAGGGTATCAATATACAACTTCCAACTATTTCGGCACGTGGAGGAGCCTGGTTGGAAGTTGGGTTGGGCCTGGAAAGGTGATGAGGTGATTTGGGCAATGTTGGGAGCAGAGGCAACGGAGCAAGGGAATTGCACAAGATTCAGAGGACAACAGAAACCGCATTGTTGTGAGAAGGAGCCAGTTATTATGGATCTTATGCCTGGAACCCCCTACAATCTACAGACTGCAAATTGCTGTAAAGGAGGGGTCCTAACATCCGTCACACAAGATCATTCCAAACGTGGTGCCACCTTCCAGATGAATTATATAAAGGCATCAGTCCCCGATTCAGGTGGCAATTTTAGCATGCCGGAAAATTTCACGCTTGGAATTCCTGGCTATAGCTGTGGGACACCATTTCAAGTCCCACCAACCAGGTTTACCAAAGATGGACACCGATGGCAACAAGTCTTGGACACGTGGAATGTGACTTGTATTTATTCCCAGTTTCTAGCATCACCTGCTCCAAAATGCTGTGTCTCGTTGTCTGCATTCTATAATAGTACCATCGTTCCTTGCCCCACATGCAGCTGCAATTGCCAAGGGCTACCAGGAGCGGATTGTGTGAAcTCTGATAAGACTTCAGTGTTGCAACTACCAGAGACAAATCACGGAGAACCACCACCACCAGTGATCAGGTGTTCACATCACATGTGCCCCATTCGTGTTCACTGGCATGTGAAACAAAGTTATAAAGAGCATTGGCGGGTCAAGATCACAATCACAAACCTGAACTTTGTCAAAAACTATTCCCAGTGGAATTTGGTGGTGTTACACCCTAACTTGCGGAGTGTAACCCAAGTTTTCAGTTTCAACTTCCAATCCCTACCAATTTATGGAAATTTCAATGACATAGGGATGTTCTGGGGGCTACCATACTACAATGACATGTTGCTGGCACATGGGGACAATGGGAATGTACAAACGGAGGTGTTACTACACAAAGATCGAGGAGAGTTTACCTTCAAAGAAGGATGGACTTTTCCTAGAAAAATTTCATTCAATGGCGATGAATGTGTCATGCCATCTCCTGACGCCTACCCTAGACTCCCCAACACAGCTCATATAACAAGCCCTcccataattttcttttcaatgttACTGCTCCAAATATTGTTCTAG 1305 0.4398 MGNILILIFFSVIVSISPPSYGYDSLDPFGNITITWDFLSDNGDTVDVRVSIYNFQLFRHVEEPGWKLGWAWKGDEVIWAMLGAEATEQGNCTRFRGQQKPHCCEKEPVIMDLMPGTPYNLQTANCCKGGVLTSVTQDHSKRGATFQMNYIKASVPDSGGNFSMPENFTLGIPGYSCGTPFQVPPTRFTKDGHRWQQVLDTWNVTCIYSQFLASPAPKCCVSLSAFYNSTIVPCPTCSCNCQGLPGADCVNSDKTSVLQLPETNHGEPPPPVIRCSHHMCPIRVHWHVKQSYKEHWRVKITITNLNFVKNYSQWNLVVLHPNLRSVTQVFSFNFQSLPIYGNFNDIGMFWGLPYYNDMLLAHGDNGNVQTEVLLHKDRGEFTFKEGWTFPRKISFNGDECVMPSPDAYPRLPNTAHITSPPIIFFSMLLLQILF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0108 434 PANTHER COBRA-LIKE PROTEIN 6 10 429 - -
Ssu1g0108 434 Pfam COBRA-like protein 48 209 IPR006918 GO:0010215|GO:0031225
Ssu1g0108 434 PANTHER PROTEIN COBRA 10 429 IPR006918 GO:0010215|GO:0031225
Ssu1g0108 434 PIRSF COBRA 1 434 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0108 Ssu-Chr1 3353251 3356844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0108 5 412 COBRA Gene Family AT1G09790 56.204 6.91e-163 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0108 - - lang:109329241 718.768