Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0107 ATGGCTGTACATACAAAATTCCGTCTTATTGCTTACTCACAAGAGATTGTAGATGGACAGcctatttttgtttcttcaaaCTGTCTTCCTATCAAGGCTTTGAAATTTGAACCTGCAGGTCATGCTTTCCATTCTGCTGCACTTAAACTTCTTGGTGTTCAAGAAGATAACAATGATGCTGATGATAAAAAAGTGGTTGATGATAAGGAACAAACATATCTCCCATCTGATTCTTATAGCAGCAAGAGCAAAAAGAAATCTGGTACCGGAGACAATCAACAAGATCACTATGCATTATTGGGTCTGGGTCATCTAAGGTATCTTGCTACAGAGGATCAAATTCGTAAAAGCTATCGTGAAACTGCCTTGAGGTTTCATCCTGATAAACAGGCTGCTCTTCTTCTTGCTGAGGAAACTGAAGCtgcaaaacaagcaaaaaaGGATGAAATAGAAACTCACTTTAAGGCAATCCAGGAAGCATATGAAGTGTTGATTGATCCTGTGAAGAGAAGAATTTATGATTCCACAGATGAGTTTGATGATGAGATTCCCACTGATTGTGCTCCACAAGACTTCTTCAAGGTGTTTGGTCCTGCTTTTATGAGGAACGGGCGGTGGTCGGTTAGTCAACCAATTCCATCACTAGGTGATGATAATACTCCAATAAAAGAAGTTGataatttctacaatttttggTACTCCTTTAAAAGCTGGAGGGAGTTTCCTCATGCTGACGAGTTTGATCTTGAGCAAGCTGAATCTCGAGACCATAGGAGGTGGATGGAAAGGCAGAATGCAAAGTTGACCGAAAAAGCTAGGAAGGAAGATTATGCACGGATACGCACTCTTGTTGATAATGCTTATAAGAGAGACCCCAGAATATtgagaagaaaggaagaagaaagagctgagaaacaaaggaaaaaggagGCTAAGATCCTGGCAAAGAAGTTGCAGGAAGAAGAAGCAGCCAGAATTGCAGAAGAGGAGAGGCAacgaaaagaagaggaagagaggcAAGCTGCAGAAGCTGCTTTACAGCAGAAGAaggtgaaagagagagagaaaaagctCTTGCGGAAGGAGCGAGCACGTCTTCGGACTCTTTCAGGACCTATTTTATCACAGCATTTGCTTGATATTTCTGATGATGATGTAGAAAGGCTTTGCATGACGCTTGATATTGAGCAGCTGAGGAGTCTGTGCAGGAACATGGAAGGCAGACAGGTGTTATTAGAGAAAGCAAAAGTTTTGGGAGATGCACTGAGTTCTAAGAAAGAGGTGGTTGATGAGAAAACTAATCAACAAAATGCCAATGGTTCCATCGAGGCTAATGGTAGTGCTTCACTAAGCAACATTGAGAAGAAGGAGAAACCTTGGAATAAAGAAGAGATTGATCTATTGAGGAAAGGAATGCAGAAATATCCCAAAGGAACTTCGCGGAGATGGGAGGTTATTTCAGAATACATTGGTACTGGAAGATCTGTTGAAGAAATTATGAAGGCAACCAAAACTGTACTCCTCCAGAAACCTGATTCATCAAAAGCTTTTGACACATTTCTTGAGAAACGGAAACCTGGTGCACAATCAATTGAGTCTCCACTGACATCCAGGGAAGAATTGGAAGGGGTATCAACTCCTGCCTCCTCAACAACAAATAACACAGAAGATTCTCATAGCAAAAGTACAGATAATCAAAACTCTACCACTGCTAATGGAGTTTCCTCTAGTTCAGAACAGGATGTGTGGTCTGCAGTGCAGGAGCGAGCACTGGTTCAAGCTTTAAAAGCCTTTCCAAAGGAAACAAGTCAGAGATGGGAGCGAGTTGCAGCAGCTGTACCTGGGAAGACTGTGAACCAGTGTAAGAAAAAATTTGCGATGATGAAGGAGAGTTTCAGGAACAAGAAAAGTGCAGTCTAA 1920 0.387 MAVHTKFRLIAYSQEIVDGQPIFVSSNCLPIKALKFEPAGHAFHSAALKLLGVQEDNNDADDKKVVDDKEQTYLPSDSYSSKSKKKSGTGDNQQDHYALLGLGHLRYLATEDQIRKSYRETALRFHPDKQAALLLAEETEAAKQAKKDEIETHFKAIQEAYEVLIDPVKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVSQPIPSLGDDNTPIKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHRRWMERQNAKLTEKARKEDYARIRTLVDNAYKRDPRILRRKEEERAEKQRKKEAKILAKKLQEEEAARIAEEERQRKEEEERQAAEAALQQKKVKEREKKLLRKERARLRTLSGPILSQHLLDISDDDVERLCMTLDIEQLRSLCRNMEGRQVLLEKAKVLGDALSSKKEVVDEKTNQQNANGSIEANGSASLSNIEKKEKPWNKEEIDLLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEIMKATKTVLLQKPDSSKAFDTFLEKRKPGAQSIESPLTSREELEGVSTPASSTTNNTEDSHSKSTDNQNSTTANGVSSSSEQDVWSAVQERALVQALKAFPKETSQRWERVAAAVPGKTVNQCKKKFAMMKESFRNKKSAV 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0107 639 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 1 637 - -
Ssu1g0107 639 Gene3D - 452 510 - -
Ssu1g0107 639 SUPERFAMILY Homeodomain-like 581 636 IPR009057 -
Ssu1g0107 639 PRINTS DnaJ domain signature 48 66 IPR001623 -
Ssu1g0107 639 PRINTS DnaJ domain signature 118 133 IPR001623 -
Ssu1g0107 639 PRINTS DnaJ domain signature 149 169 IPR001623 -
Ssu1g0107 639 MobiDBLite consensus disorder prediction 433 454 - -
Ssu1g0107 639 MobiDBLite consensus disorder prediction 521 581 - -
Ssu1g0107 639 Pfam DnaJ domain 95 174 IPR001623 -
Ssu1g0107 639 ProSiteProfiles SANT domain profile. 578 633 IPR017884 -
Ssu1g0107 639 MobiDBLite consensus disorder prediction 59 92 - -
Ssu1g0107 639 SUPERFAMILY Homeodomain-like 452 501 IPR009057 -
Ssu1g0107 639 CDD SANT 459 501 IPR001005 -
Ssu1g0107 639 Gene3D DnaJ domain 78 187 IPR036869 -
Ssu1g0107 639 MobiDBLite consensus disorder prediction 329 351 - -
Ssu1g0107 639 SMART sant 579 631 IPR001005 -
Ssu1g0107 639 SMART sant 456 509 IPR001005 -
Ssu1g0107 639 Coils Coil 295 369 - -
Ssu1g0107 639 SMART dnaj_3 94 169 IPR001623 -
Ssu1g0107 639 ProSiteProfiles Myb-like domain profile. 452 507 IPR001005 -
Ssu1g0107 639 CDD SANT 583 629 IPR001005 -
Ssu1g0107 639 Pfam Myb-like DNA-binding domain 582 627 IPR001005 -
Ssu1g0107 639 ProSiteProfiles dnaJ domain profile. 95 177 IPR001623 -
Ssu1g0107 639 MobiDBLite consensus disorder prediction 73 87 - -
Ssu1g0107 639 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 637 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Ssu1g0107 639 MobiDBLite consensus disorder prediction 530 581 - -
Ssu1g0107 639 MobiDBLite consensus disorder prediction 428 456 - -
Ssu1g0107 639 SUPERFAMILY Chaperone J-domain 93 201 IPR036869 -
Ssu1g0107 639 CDD DnaJ 95 166 IPR001623 -
Ssu1g0107 639 Gene3D - 573 639 - -
Ssu1g0107 639 ProSiteProfiles Myb-like domain profile. 575 629 IPR001005 -
Ssu1g0107 639 ProSitePatterns Nt-dnaJ domain signature. 154 173 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0107 Ssu-Chr1 3344986 3346905 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0107 96 295 C2H2 Transcription Factor Family AT1G74250 29.289 1.57e-18 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu1g0107 DnaJ 5.4e-17 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0107 K09522 - gmx:100814414 1053.89