Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0094 ATGTGTTGCTTGGAGGCTAATGAAATGAGGCAAGGTGAAGCCAATTCAGCCCAGGGTGTTAAATGCGATGGTAAAATCCCGCAGGTCAATCGGTTGCATCATGCCAATGCTCATCAGAATTTCTCTTCCCAACCCAAGTTTTTGAGCTCCAATTTTCTGTTCTCTGTCCCACCTAAGAAGCCTAGCCACGAAGAACCACTCCCTGGGACTGCCACGTTTGTTGTTCGACGAAGTGAAAATATTCAAGGTTCACAGAGAGTACAAGTTGAGAAGGCTTGGATTGCTCTTTCAAGTCTACAAAATTCTAGTAGGAATTATGTTCAACCTGGAAAAATGGTTGAGGTTACTCCTCAGCTTCATGAAGATAGGAGAACAACTTCCTTCCAAGGGGGCTATGAGAATGACAAGCATAGGTGTCCTGATGTCACTACAACTCCAATTGTTATCGATCATAGTTCTTGGGGTTTAGAAGGTTCGGTGAACAATCATACTAAGTACACAGGCCAAATCAATGAGCCTTCCAAATGTATGGTTGATGATATTGGTGATGATGACATACTTGAGAACATTGATGTTGACCAAATTGTTGAGAAATACCAGTCAACTTGCACTCCCAAACCATCAATATCCAAGCTTCCTCCTATAACACCAACTGCAGATAAAGATAATTTTGCTAGACAGGGGGATAATGTTTTGCCACCGGAGCTGTGTTTAGATTGCATCCATGGTTACAAGTTAGGGCTTTGCCCTGAAGCAGCAAGTCATTTGCAGGAATTGAAGGATAACTTAATTGCTATCTCTAATGAACTGCTTGACAATGGTGAAAACCTCAATTCTACTCAAATAGTAAAGCTTCGCCATGATAGGTCACAGCTGAATAAGCAAATTCAACTgcttgaaaaatatattcattctGGTAATCTTAATGAGGAAAGGCAAAAGTCACATTTTTTTGCATCCACGGCACCACCTACATCTTTCATGTATGAAACACCTCAGCCAAGTGTACTTTGTAATGGACCTAAGAGAGATGGTACCCAGGCTTATATGGGTAATGGGACATATGGGTCATCGTCCCAGTGTCTTCCATCCTTTTCTGTAGATAAGTACAGCATGTCATCAGCTCCGGTGGAGAGGGAAGCATTCAtcccaaaaattattgaagttaATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCAGCCATGATTTTCCTTGGACAAAAGAGTTAGAGgttaataataaaaaagtatttggaAATCACTCATTTCGCCCCAATCAAAGAGAGGTCATTAATGCCACAATGAATGGATGTGATGTTTTTGTTCTGATGCCCACTGGTGGTGGAAAGAGTCTGACCTATCAGTTACCAGCTCTTATTTGTCCCGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAATATATCTGCTGCTTACTTAAGTGCCAATATGGAATGGAATGAACAGCAGGAGATCCTCCGAAAACTAAATTCTGATTATTGTAAATACAAGTTATTGTATGTGACACCTGAAAAGGTTGCCAAAAGTGATGTTCTTCTGCGACACTTGGAGAATTTACATGTTCGCGACTTGCTTGCAAGGATTGTAGTTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTATATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTCAAAGAAGATGTCGTGCAGGCACTTGGTCTTGTTAACTGCATCATTTTTCGGCAAAGTTTTAATCGCCCAAACTTATGGTATTCTGTTATCCCCAAGACCAAAAAGTGTTTGGGGGACATTGACAAATTCATTAGGGAGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAGAAATTACAGGAATGCGGGCATAAATGTGCATTTTATCATGGTAGCATGGATCCTGCTCAACGTACCTCTGTTCAAAAGCAGTGGAGCAAAGATGAGATCAATATAATTTGTGCTACTGTGGCATTTGGAATGGGTATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGgAATGTGGACGAGCTGGTAGAGATGGTCAACGTTCATCCTGTGTATTATATTATAGCTATAGTGATTATATACGAGTTAAGCATATGTTATGTCAAGGAGCAATAGAGCAAAGTCCCATGACATCTGGATACAACCGTTCAAATATGACAAATTCAGGAAGGATACTAGAAACAAACACCGAAAACCTTATGCgaatgGTCAGTTATTGTGAAAATGATGTTGATTGTCGACGCCTTCTGCAGCTTGCTCATTTTGGGGAGAAGTTCAATTCTTCAACTTGTCAGAAAACATGTGATAATTGCTTGAAGATCACAAGTTTCATTGAGAAGGATGTCACAGAGATTGCAAAGCAATTGGTTGAACTTGTTAAGCTAACAGGACAGAGGGTCTCATCATCTCATATATTAGAAGTGTATCGTGGTTCCTTGAGTCAGTTGGTCAAGAAACACCGGCATGAGACCGTGAGCCTTCACGGTGCTGGAAAGCGTTTAGCTAAGGGTGAGGCTTCCCGCGTATTACATCATCTTGTTGTTGAGGATTTTCTTGTGGAGGAAGTaaagaaaagtgatttttatggATCGGTATCATCAATATTGAAGgTAAATGAGCCCAAGGTCCGTAATCTGTATGCTGGGCAGAGAATTATATTGAGatTCCCATCCACTGTAAATGCATCAAAACCAGGGAAATCTGATGTAACTCCAGCTAAGGGTTCTCTGACATGTGGGAAGCTGAATGTTACGCTAATTGACACTCCTGCCCAGCCTCAAACTGAAGTGGATTTGGATCTTTCAGCGAAGTTATACACTGCTCTGCGGATGTTGAGGACAAGTCTTGTTAGAGAAGCTGGAGAGGGTGTCATGGCTTACCACATATTTGGTAATGCCACGTTGCAGCAGATAAGCAAGAGAGTGCCGAGAACAAAAGAAGAACTCCTTGATATCAATGGCATTAGCAAGACTAAGGTAAGCAAGTATGGGGATCGGTTACTGGAAACCGTTGAAAATACCATAAATGAATATTACAATTTGGACAAAATCAGCAGTGGCAGCAAAGGCAGTGCGGATTCTACCAAAAGGAGACGAGAGACAAATGGAGACCCAGATACAAATGCTGAGGATGATTCCTTCACCAAAAGTACAGGTCGTTCAAAGAAAAGGACAGTAaagagacaaaatagaaaagctGTGATATATGATTCTGAAAAGGAAGATTATTTCCAAGGATGCCCTGATGAAGACCTAGATTTTGACATCATAGAAATTGATGCATTAGATGAAGCAACGTGTAGAAATGCTGCAGGTAGAGTACTACCTCAATGGACAgcatcttaa 3522 0.3992 MCCLEANEMRQGEANSAQGVKCDGKIPQVNRLHHANAHQNFSSQPKFLSSNFLFSVPPKKPSHEEPLPGTATFVVRRSENIQGSQRVQVEKAWIALSSLQNSSRNYVQPGKMVEVTPQLHEDRRTTSFQGGYENDKHRCPDVTTTPIVIDHSSWGLEGSVNNHTKYTGQINEPSKCMVDDIGDDDILENIDVDQIVEKYQSTCTPKPSISKLPPITPTADKDNFARQGDNVLPPELCLDCIHGYKLGLCPEAASHLQELKDNLIAISNELLDNGENLNSTQIVKLRHDRSQLNKQIQLLEKYIHSGNLNEERQKSHFFASTAPPTSFMYETPQPSVLCNGPKRDGTQAYMGNGTYGSSSQCLPSFSVDKYSMSSAPVEREAFIPKIIEVNYIEGSGDKRWSSHDFPWTKELEVNNKKVFGNHSFRPNQREVINATMNGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANISAAYLSANMEWNEQQEILRKLNSDYCKYKLLYVTPEKVAKSDVLLRHLENLHVRDLLARIVVDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWYSVIPKTKKCLGDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPAQRTSVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMLCQGAIEQSPMTSGYNRSNMTNSGRILETNTENLMRMVSYCENDVDCRRLLQLAHFGEKFNSSTCQKTCDNCLKITSFIEKDVTEIAKQLVELVKLTGQRVSSSHILEVYRGSLSQLVKKHRHETVSLHGAGKRLAKGEASRVLHHLVVEDFLVEEVKKSDFYGSVSSILKVNEPKVRNLYAGQRIILRFPSTVNASKPGKSDVTPAKGSLTCGKLNVTLIDTPAQPQTEVDLDLSAKLYTALRMLRTSLVREAGEGVMAYHIFGNATLQQISKRVPRTKEELLDINGISKTKVSKYGDRLLETVENTINEYYNLDKISSGSKGSADSTKRRRETNGDPDTNAEDDSFTKSTGRSKKRTVKRQNRKAVIYDSEKEDYFQGCPDEDLDFDIIEIDALDEATCRNAAGRVLPQWTAS 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0094 1173 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 120 1140 - -
Ssu1g0094 1173 Gene3D HRDC domain 988 1074 IPR044876 -
Ssu1g0094 1173 SMART ultradead3 420 623 IPR014001 -
Ssu1g0094 1173 Pfam RecQ zinc-binding 749 831 IPR032284 -
Ssu1g0094 1173 Pfam RQC domain 837 951 IPR018982 GO:0006260|GO:0006281|GO:0043138
Ssu1g0094 1173 MobiDBLite consensus disorder prediction 1084 1111 - -
Ssu1g0094 1173 CDD SF2_C_RecQ 615 747 - -
Ssu1g0094 1173 Coils Coil 282 302 - -
Ssu1g0094 1173 SMART RQC_2 840 950 IPR018982 GO:0006260|GO:0006281|GO:0043138
Ssu1g0094 1173 Gene3D - 838 947 IPR036388 -
Ssu1g0094 1173 PANTHER DNA HELICASE RECQ FAMILY MEMBER 120 1140 - -
Ssu1g0094 1173 MobiDBLite consensus disorder prediction 1078 1122 - -
Ssu1g0094 1173 SMART hrdc7 991 1073 IPR002121 GO:0003676
Ssu1g0094 1173 SMART helicmild6 657 738 IPR001650 -
Ssu1g0094 1173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 756 IPR027417 -
Ssu1g0094 1173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 881 IPR027417 -
Ssu1g0094 1173 SUPERFAMILY HRDC-like 994 1067 IPR010997 GO:0000166|GO:0044237
Ssu1g0094 1173 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 632 793 IPR001650 -
Ssu1g0094 1173 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 546 555 IPR002464 -
Ssu1g0094 1173 Gene3D - 615 834 IPR027417 -
Ssu1g0094 1173 ProSiteProfiles HRDC domain profile. 991 1073 IPR002121 GO:0003676
Ssu1g0094 1173 CDD DEXHc_RecQ 415 614 - -
Ssu1g0094 1173 Pfam HRDC domain 995 1063 IPR002121 GO:0003676
Ssu1g0094 1173 Pfam DEAD/DEAH box helicase 426 594 IPR011545 GO:0003676|GO:0005524
Ssu1g0094 1173 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 416 891 IPR004589 GO:0004386|GO:0006310
Ssu1g0094 1173 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 432 607 IPR014001 -
Ssu1g0094 1173 Pfam Helicase conserved C-terminal domain 634 737 IPR001650 -
Ssu1g0094 1173 Gene3D - 388 614 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0094 Ssu-Chr1 3257388 3265134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0094 646 769 Eukaryotic Initiation Factors Gene Family AT3G19760 24.409 1.25e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0094 K10901 - gmx:100800006 1974.52