Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0090 ATGAAGGCAGAGTACATACCACCTAGAGAGGATGTTGTCATGCAAAATGAAGCACCAGATGATGTTTACATTATAGTGTCTGGGGAAGTGGAGATCATCGATAGTGTAATGGAGAAAGAGAGAACTTTAGGGACTCTACATACTGGGGACATGTTTGGAGAGGTTGGTGCACTTTGTTGCAGACCTCAGAGCTTTACCTACAGAACCAAGACTCTCACACAGTTCCTGAGACTGAAAACCAATACTCTTATAGAAGCAATGCAGATTAGAAAAGAAGACAATATACAAATGCTCAAAAATTTTCTTCAGCATTTCAAGCAGCTTAAGGATCTGAGTATCAGAGATTTGATGGTGGAGaatgtggaagaagaagaagatccTAACATGGCTGTGAACTTGTTAACTGTGACAAGCACAGGCAATGCTGCTTTTCTTGAGGAGCTTCTAAGAGCAGGTTTGGATACTGACATTGGAGACTCCAAAGGGAAAACTCCATTGCACATAGCAGCATCAAATGGGCATGAAGAGTGTGTTAAAGTCTTACTCAAGCATACGTGCAACATACATATAAAAGACATGAATGGTAACACTGCATTATGGGATGCTATAGTATCAAAACATTACTCCATATTCCGGATCCTCTTCCAGCTTGCTGCTCTCTCTGATCCAAACACAGCAGGCGATCTCCTGTGTACAGCagcaaaaagaaatgaattaacAGTGATGAACGATCTTTTAAAGCAAGGATTAAACGTTGACTCAAAAGATCACCATGATACAACAGCAATCCAAATTGCCATGGCAGAAAATCATGTGGACATGGTTCAGTTGCTTGTCATGAATGGTGCAGATGTCTCTGACGTACATAACCATGAATTTTCTTCATTCACCTTAAATGAAATGCTGCAGAAGCGTGAAGTTGGGCATCTAATTAATGTAAATGAGGCCATGCCCGGTGAAGTTGTATTAAAGGGGCGACATCAAGAGCAGGAGCACAATGGACGAAGATCTAATGGAGTAAAGTTTCCAAGAGTAAGCATATATAGAGGTCACCCCACagtaagaagagaaaaaggttTCATGGAAGCTGGGAAGCTAATAAGGTTGCCTGATTCATTAGAGGAGCTCAAAACTATTGCAgGTGAAAAATTTGGGTTCGATGCAAAAGATGCAATGGTGACAAATGAAGAAGGAGCAGAAATAGACTCTATTGATGTGATCAGAGATAAtgataaacttttttttgttgaatag 1254 0.382 MKAEYIPPREDVVMQNEAPDDVYIIVSGEVEIIDSVMEKERTLGTLHTGDMFGEVGALCCRPQSFTYRTKTLTQFLRLKTNTLIEAMQIRKEDNIQMLKNFLQHFKQLKDLSIRDLMVENVEEEEDPNMAVNLLTVTSTGNAAFLEELLRAGLDTDIGDSKGKTPLHIAASNGHEECVKVLLKHTCNIHIKDMNGNTALWDAIVSKHYSIFRILFQLAALSDPNTAGDLLCTAAKRNELTVMNDLLKQGLNVDSKDHHDTTAIQIAMAENHVDMVQLLVMNGADVSDVHNHEFSSFTLNEMLQKREVGHLINVNEAMPGEVVLKGRHQEQEHNGRRSNGVKFPRVSIYRGHPTVRREKGFMEAGKLIRLPDSLEELKTIAGEKFGFDAKDAMVTNEEGAEIDSIDVIRDNDKLFFVE 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0090 417 Gene3D Jelly Rolls 1 121 IPR014710 -
Ssu1g0090 417 ProSiteProfiles cAMP/cGMP binding motif profile. 1 104 IPR000595 -
Ssu1g0090 417 Pfam KHA, dimerisation domain of potassium ion channel 343 415 IPR021789 -
Ssu1g0090 417 CDD CAP_ED 1 98 IPR000595 -
Ssu1g0090 417 ProSiteProfiles Ankyrin repeat region circular profile. 161 192 - -
Ssu1g0090 417 SMART ANK_2a 258 287 IPR002110 GO:0005515
Ssu1g0090 417 SMART ANK_2a 194 225 IPR002110 GO:0005515
Ssu1g0090 417 SMART ANK_2a 161 190 IPR002110 GO:0005515
Ssu1g0090 417 SMART ANK_2a 128 157 IPR002110 GO:0005515
Ssu1g0090 417 SUPERFAMILY cAMP-binding domain-like 1 104 IPR018490 -
Ssu1g0090 417 Gene3D - 130 312 IPR036770 -
Ssu1g0090 417 Pfam Ankyrin repeats (3 copies) 140 217 IPR002110 GO:0005515
Ssu1g0090 417 ProSiteProfiles Ankyrin repeat profile. 161 193 IPR002110 GO:0005515
Ssu1g0090 417 ProSiteProfiles Ankyrin repeat profile. 258 290 IPR002110 GO:0005515
Ssu1g0090 417 PANTHER POTASSIUM CHANNEL AKT2/3-LIKE 1 417 - -
Ssu1g0090 417 ProSiteProfiles Ankyrin repeat region circular profile. 258 286 - -
Ssu1g0090 417 ProSiteProfiles KHA domain profile. 344 417 IPR021789 -
Ssu1g0090 417 SMART cnmp_10 1 102 IPR000595 -
Ssu1g0090 417 PRINTS Ankyrin repeat signature 162 177 IPR002110 GO:0005515
Ssu1g0090 417 PRINTS Ankyrin repeat signature 274 288 IPR002110 GO:0005515
Ssu1g0090 417 Pfam Cyclic nucleotide-binding domain 5 88 IPR000595 -
Ssu1g0090 417 PANTHER POTASSIUM CHANNEL AKT1 1 417 IPR045319 GO:0005249|GO:0006813
Ssu1g0090 417 SUPERFAMILY Ankyrin repeat 93 294 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0090 Ssu-Chr1 3166105 3168016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0090 1 166 Ion Channels AT4G22200 69.231 2.55e-74 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0090 K21867 - gmx:100798422 740.725