Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0089 ATGGAGGGGAACTTCAGTTCGTACAATCCTCAACCAGCCTCTAACTTGAAAAAGAGTTACAGGAAGCAGGAGCATGATCATTCAGGGGAGCATCATCATCTCAAAGAAGAAGATTATATGGCCCCATCTTTCAATCTGAGGAATGTTTCAAAGCTCATTCTTCCCCCACTGGGTGTTTCAAGCCAGAATCCAGTTAACTCAAAAGGCTGGATCATATCTCCACTGGATTCAAGATATAGGTGTTGGGAGAGTTTTATGGTTCTGCTGGTAGCTTACTCTGCATGGGTGTATCCCTTTGAAGTTGCTTTCATGCACAAAACttctaataagaaaatatatattgtggACACTGTTGTTGATCTTTTCTTCGGTATTGATATTGTTCTGACATTCTTCGTGGCTTACATTGATCGAACAACTCATCTACTAGTTCGAGATAAGAAGAAGATTGTAGTGAGATACTTGTCTACATGGTTCGTGATGGATTTGGCATCAACAATACCATACGAGGCACTTGGGTATTTGTTCACTGGCAAACGCAAAGTGGGTCTCCCGTACTTCCTATTGGGCATGCTCAGATTTTGGAGGATCAGACGGGTCAAGCAATACTTCACAAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGGTCCGATGTGCTAGGCTTCTTTCTGTAACACTTTTTTCAATTCATTGTGCTGGGTGTCTCTATTACATGCTAGCTGATCGCTACCCCCACCAAGGAAAGACATGGATTGGAGCTGTGAACCCAAACTTCCGAGAGACAAGCCTTCGGATCAGATACATCTCAGCCATGTACTGGTCCATCACTACCATGACCACTGTTGGTTATGGTGACCTCCATGCCGTGAACACCATGGAAAtgatcttcattattttctacATGCTCTTTAACCTTGGCCTAACTGCTTACTTGATTGGTAACATGACAAATCTTGTTGTTGAAGGAACTCGCCGTACCATGGAATTTAGAAATAGCATTGAAGCAGCATCAAACTTTGTGTGCAGAAATCGGTTGCCTCCAAGGTTAAAGGAGCAGATCTTGGCTTACATGTGTTTAAGATTTAAGGCAGAGAGCTTGAATCAGCATCAGCTTATTGAACAGCTACCAAAGTCGATTTGCAAAAGCATCTGCCAGCATTTGTTTTCTGAAACTGTAGAGAAAGTCTATCTTTTCAAAGGCGTctcaaagaaattattttgtcCCTGGTATGAAACTAACAATTGTATGGACGTAAATCAGTCATTGCGCAAGAAAATTGATGGGATGAATTGTTGA 1302 0.4055 MEGNFSSYNPQPASNLKKSYRKQEHDHSGEHHHLKEEDYMAPSFNLRNVSKLILPPLGVSSQNPVNSKGWIISPLDSRYRCWESFMVLLVAYSAWVYPFEVAFMHKTSNKKIYIVDTVVDLFFGIDIVLTFFVAYIDRTTHLLVRDKKKIVVRYLSTWFVMDLASTIPYEALGYLFTGKRKVGLPYFLLGMLRFWRIRRVKQYFTRLEKDIRFSYFWVRCARLLSVTLFSIHCAGCLYYMLADRYPHQGKTWIGAVNPNFRETSLRIRYISAMYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFSETVEKVYLFKGVSKKLFCPWYETNNCMDVNQSLRKKIDGMNC 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0089 433 MobiDBLite consensus disorder prediction 18 33 - -
Ssu1g0089 433 Pfam Ion transport protein 80 328 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu1g0089 433 PANTHER POTASSIUM CHANNEL AKT1 48 408 IPR045319 GO:0005249|GO:0006813
Ssu1g0089 433 SUPERFAMILY cAMP-binding domain-like 326 407 IPR018490 -
Ssu1g0089 433 PRINTS EAG/ELK/ERG potassium channel family signature 127 136 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g0089 433 PRINTS EAG/ELK/ERG potassium channel family signature 92 99 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g0089 433 PRINTS EAG/ELK/ERG potassium channel family signature 295 306 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g0089 433 PRINTS EAG/ELK/ERG potassium channel family signature 269 286 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g0089 433 PRINTS EAG/ELK/ERG potassium channel family signature 313 322 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g0089 433 PRINTS EAG/ELK/ERG potassium channel family signature 116 126 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g0089 433 SUPERFAMILY Voltage-gated potassium channels 74 322 - -
Ssu1g0089 433 MobiDBLite consensus disorder prediction 1 17 - -
Ssu1g0089 433 MobiDBLite consensus disorder prediction 1 33 - -
Ssu1g0089 433 Gene3D - 80 322 - -
Ssu1g0089 433 PANTHER POTASSIUM CHANNEL AKT2/3 48 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0089 Ssu-Chr1 3160282 3166081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0089 1 408 Ion Channels AT4G22200 70.732 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0089 K21867 - gmx:100798422 790.03