Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0085 ATGAAGATTGTTGTGATGCTATTGCTACCCTTGCTGTTTGCACTGTTTCCATGCACGAAATCAGCAGCGCCCGCTCCATCCACATCCATATGCCCCATGGACCTAAATTATGTGCTCAGAATCCCATGGAACGCTTCTGCTTGCCACAACTTCCAACAAACTTTGGCATCCAAAAATGGAACAGATGCAAACAATTGTTGCATAACTCTGTTGTCCCTCCTTGGCATAGGACTTGCACAGCATCTCAAAGAGACTTCTCAGTTCCAACTCCCCAATCTTGCCACCTCCATTTCATGCATCCAAGACTTCCAATCCAAGCTCTCTTCCCTCTCTCTCCCCAGCAACCTTGTCGACTCCTGCTTTGGCCCTCTTCAGTTTGTGATCTCCCCCAACATCTGTGCCGGTATTCAAACCATCTCTGATTGGACCAAAAAGCTTGGTCAGTCCACAGCAATCAACACTGCTTGCAGACCAGATCTCACTGCTCTCTCCCTCTGTGATTTGTGTCTGGCAGCTGGCTTACAGGTCAAGCAGCAGCTTATTTCCATTGATGGTAATGCTTCACATTCCATggattgtttttacttttccatTCTCTATGCTGCTGGAATTGTTAACGAGCTTGGACCTGAAAGCAATGGTGCTCTGAGTTGCATTTTTAGCGTGTCGGTTTATTCACAAGGGGGATCTGGGGGAAAGGGTCACCAGGCTCTTGTGTTTGGGTTGACAGGAGCTGGGGTTGCTTTGTTGGTGATGTCTTTTTTGTTGGGGCTGTATGTGTGGTATGACAGGAAGCATAGGAGGAAAAAACTTGAGACTTTTCAGTTCGACTTTGACCCTGAGGAACAAGGGTCTAGGCCCAGATTGAGACCCAGTACGGGGTCCATTTGGTTCAAAATTGAGGAACTTGAGAAGGCTACTGATAATTTTTCATCTAAGAACTTCATTGGCCGAGGTGGGTTTGGGTTGGTCTTCAAGGGAACCTTGTCTGATGGGACTGTGGTGGCGGTCAAAAGGGTCTTGGAATCTGATTTTCAAGGAGATGTTGAGTTTTGTAATGAGGTGGAGATTATTAGCAACCTGAAGCACCGAAATCTGGTGCCGCTTAGAGGCTGTTGTGTGGCTGAGGAGAGTGAGATTTATGATGAAAGGGGAAACCAGAGGTATCTTGTGTACGATTACATGCCAAATGGTAACCTGGAGGATCATCTCTTTGTATCAAGGGGCACTCAGAAAGCAGAGGGATCATTGACTTGGCCTCAGAGGAAAAGCATAATCTTGGATGTGGCAAAGGGGTTGGCTTATCTGCACTATGGAGTTAAACCTGCAATTTACCACAGGGATATCAAGGCCACCAATATACTACTTGATGCAGATATGAGGGCAAGAGTTGCTGATTTTGGGCTTGCTAAACAAAGCAGGGAGGGTCAGTCTCATCTCACTACTAGAGTGGCTGGGACTCATGGATATCTAGCCCCCGAATATGCACTCTATGGTCAGCTCACTGAGAAGAGTGATGTCTATAGCTTTGGTGTGGTTGTTTTGGAAATAATGTGTGGAAGGAAGGCTCTTGACTTGTCTTCTTCAGGATCACCCCGGGCATTCTTGATCACAGATTGGGCTTGGTCATTGGTGAAGGCTGGGAAGATAGAAGAGGCTCTGGATGCTTCCCTGGTTAAGGATGAGAACCTTCCTAGTTCAAATCCTAAGAGCATAATGGAGAGGTTTTTGCTGGTGGGAATTCTATGCTCTCATGTGATGGTTGCTTTGAGGCCAACAATTGCTGATGCTTTGAAGATGTTGGAAGGTGATATTGAGGTTCCTCAAATCCCAGATCGCCCTATGCCTCTTGGCCATCCTTTGTTTTATAATGATGGTAGTACTTTTAGCATATCTCCAGCATTAAGCGGCCCCAAATTGCAAACTGGAGACATGCTCAGGTCCATTAGTGAGAGCTAA 1959 0.4599 MKIVVMLLLPLLFALFPCTKSAAPAPSTSICPMDLNYVLRIPWNASACHNFQQTLASKNGTDANNCCITLLSLLGIGLAQHLKETSQFQLPNLATSISCIQDFQSKLSSLSLPSNLVDSCFGPLQFVISPNICAGIQTISDWTKKLGQSTAINTACRPDLTALSLCDLCLAAGLQVKQQLISIDGNASHSMDCFYFSILYAAGIVNELGPESNGALSCIFSVSVYSQGGSGGKGHQALVFGLTGAGVALLVMSFLLGLYVWYDRKHRRKKLETFQFDFDPEEQGSRPRLRPSTGSIWFKIEELEKATDNFSSKNFIGRGGFGLVFKGTLSDGTVVAVKRVLESDFQGDVEFCNEVEIISNLKHRNLVPLRGCCVAEESEIYDERGNQRYLVYDYMPNGNLEDHLFVSRGTQKAEGSLTWPQRKSIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKAGKIEEALDASLVKDENLPSSNPKSIMERFLLVGILCSHVMVALRPTIADALKMLEGDIEVPQIPDRPMPLGHPLFYNDGSTFSISPALSGPKLQTGDMLRSISES 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0085 652 CDD STKc_IRAK 316 603 - -
Ssu1g0085 652 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 647 - -
Ssu1g0085 652 Pfam Protein kinase domain 312 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0085 652 SMART serkin_6 310 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0085 652 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Ssu1g0085 652 Gene3D Phosphorylase Kinase; domain 1 282 394 - -
Ssu1g0085 652 ProSiteProfiles Protein kinase domain profile. 310 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0085 652 SUPERFAMILY Protein kinase-like (PK-like) 287 602 IPR011009 -
Ssu1g0085 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Ssu1g0085 652 Pfam SPARK 27 194 IPR043891 -
Ssu1g0085 652 Gene3D Transferase(Phosphotransferase) domain 1 395 609 - -
Ssu1g0085 652 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 27 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0085 Ssu-Chr1 2967956 2970566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0085 19 647 Receptor kinase-like Gene Family AT1G11050 66.032 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Ssu1g0085 Pkinase 5.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0085 - - gmx:100806560 1159.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0085 1 2967956 2970566 Ssu5g2590 5 70484570 70485298 PCT