Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0084 ATGGAGTCAGATACCTACTTTGCAACGAGTATGGATTTTGGAAAGACTAATGAAGCACCCGATTCAAAGGTTCATGACTTCGACTTAAACATTCCATATGCGGAGGACTCTGATGTGAATGCTGAAAACGAGTTTTCATCGCCCATTCTCATGGATACTCAGCAGGCTTCTCAAAATAGCATTGAAAACATGAACGTAGAGGATGCAAATAACGCGGACAATGAAGTTCACCAATCATCTGAAGTGGACACAATTATGCAAGCAAATTCTGCTGCTGGAGGAGCTACCTCTGAAGATACGAGGGAAGTTGAACCCAAGTATATTGCCTCTGTCTCCTTTGCACCAGTAAGAATCTCACAACGTGGCCGCCGCAGCCGCCGCCACGGTAAAGAAGTTAAGCAGAGTACTGATCCAGATAGATTCTgcacaaatttttattgtaagaCAAGAAGAACTCCCATGTGGCGCAAGGGACCTCTGGGACCAAAGACTTTGTGCAATGCTTGTGGCCTTCAATACATTAAGATGGTGTCGGGTAGAGGCAGTGGCCTCCCAGCTGCAGCTCCTGATGATGGTGATGCTTCCACTGCCGATGATGGTGCTTCTCCTCGTCCTGTCCCAGCTGAAACCGTGGAAGGGGATTCAAATCTCTAA 654 0.4587 MESDTYFATSMDFGKTNEAPDSKVHDFDLNIPYAEDSDVNAENEFSSPILMDTQQASQNSIENMNVEDANNADNEVHQSSEVDTIMQANSAAGGATSEDTREVEPKYIASVSFAPVRISQRGRRSRRHGKEVKQSTDPDRFCTNFYCKTRRTPMWRKGPLGPKTLCNACGLQYIKMVSGRGSGLPAAAPDDGDASTADDGASPRPVPAETVEGDSNL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0084 217 PANTHER GATA TRANSCRIPTION FACTOR 42 180 - -
Ssu1g0084 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 180 - -
Ssu1g0084 217 SMART GATA_3 136 193 IPR000679 GO:0006355|GO:0043565
Ssu1g0084 217 PANTHER PROTEIN GAT2-RELATED 42 180 - -
Ssu1g0084 217 CDD ZnF_GATA 141 190 IPR000679 GO:0006355|GO:0043565
Ssu1g0084 217 Pfam GATA zinc finger 147 174 IPR000679 GO:0006355|GO:0043565
Ssu1g0084 217 MobiDBLite consensus disorder prediction 180 217 - -
Ssu1g0084 217 ProSiteProfiles GATA-type zinc finger domain profile. 147 173 IPR000679 GO:0006355|GO:0043565
Ssu1g0084 217 MobiDBLite consensus disorder prediction 1 16 - -
Ssu1g0084 217 Gene3D - 138 203 IPR013088 GO:0006355|GO:0008270
Ssu1g0084 217 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0084 Ssu-Chr1 2948252 2949650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0084 142 175 C2C2-Gata Transcription Factor Family AT3G20750 64.706 5.49e-12 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu1g0084 GATA 1.4e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0084 - - gmx:102663335 257.684