Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0079 ATGGGAAGAAGAAACGGTGGAAGGTCTCTGCAAGAAACCCTCCGTCGTCGACTTGACTCCTGCAAGTCCAGATTCTCCACCGCCGAAGAAATCGCGAACCATCTCCGTTCAACGTACCCCGATTACCACCGAACCAAGTACCAAACCCTAATTCGATTTGTTCAGGAAGCTCTTTACTCCACCGCGAAGCTTAATCATACTCCCACACCCAAGCATTGCGACGACGACGATGACGACGAAGGAGACGCTCGAAGCGCGTCTCAGAAGCGACGGAAGAAGATCGACGAAAGTGAAGAGAGACTGCAAAGGATCGAAGCGTTGCACGTCCGAAGGAGGGTGCAGAGCGATCCCTCGACGTCTTCTGCTTCGGAGAGCGACAACGAAGACGGGGAAGAAACCGTGTCGACGTCGGAGGACGCAATTTACGAGGAGAAGGTGGAACCTGAGTTTGATTTGATGAGGGCAATGCTGCGAAAGTCGTATACACCGAAGAAGGTCGCGGCGGCGGAGGAAAAGAACATTGAATTGGAGGTGGGGAATAGCAGTAAGGGCACTACTAGTGCTCTTTCGAATGTGGAAAGGAAGGAAGTGAGGGGTTCCGTTTCGAACGGTGAGGTGAAGGGGGAGGATGGACCGAGATTTAGGGATTTGGGTGGGATGAAGGAGGTTTTGGAGGAACTGAAGATGGAAGTGATTGTGCCTTTGTACCACCCACAGTTGCCTAGACAGTTAGGTGTGAGGCCAATGGCTGGCATTTTGTTGCATGGACCACCTGGCTGTGGGAAGACTAAACTTGCTCATGCTATAGCTAATGAGACTGGTCTTCCTTTCTATCAGATTTCAGCTACTGAGGTGGTTTCTGGAGTCTCAGGTGCATCGGaagaaaatattagagagctttTCTCTAAAGCATACAGGACTGCACCGTCAATTGTCTTTATTGATGAGATTGATGCAATTGCCTCTAAAAGAGAGAATTTGCAGCGTGAGATGGAGAAACGAATTGTGACGCAATTAATGACTTGCATGGATCAATCAAATAGGCTTCTTCAACCAGCAGACGATTCGGAGAGTTCTGATGATCATCATCCTGGCTATGTTCTTGTAATTGGAGCTACAAATAGGCCTGATGCTGTTGACCCTGCCCTGAGAAGGCCCGGCCGGTTTGATCGTGAGATTGTCATTGGCATTCCTGATGAATCTGCCAGGGAGGAGATCCTTTCTGTGCTTACTTGCAATCTTAGGCTTGAGGGTTTATTTGATCTGCGGAAAATAGCCAGGGCTACACCAGGATTTGTTGGTGCTGATATAGCAGCTCTGGTTAACAAGGCTGGTAATCTGGCAATGAAGAGAATAATTGATGAAAGGAAACGTGAATTATCTCAAGATCTCATGGGTGAGCCTGCTGAAGACTGGTGGAGGGAACCTTGGTTGCCTGAAGAAATAGATAAGCTTGCCATCAAAATGTCCGATTTTGAGGAAGCAGTCAAAGTGGTGCAACCTTCATCAAGAAGAGAAGGGTTCTCTTCCATTCCTAATGTAAAATGGGAAGATGTTGGAGGGCTTGATCTTTTAAGACAGGAGTTTGAACGTTACATTGTAAGGCGTATAAAATATCCTGAAGATTATGAGAGGCTTGGGGTAGATCTTGAGACGGGATTTTTGCTTTATGGACCTCCTGGTTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGAGGCAGGGgctaattttattcatattaagGGACctgaacttttaaataaatatgttggAGAAAGTGAGCTTGCAGTTCGTACATTGTTTGGCCGTGCAAGGATATGTGCGCCTTGTATACTTTTTTTCGATGAGGTGGACGCTTTGACAACCAAACGTGGTAAAGAAGGTGGTTGGGTTATTGAACGACTATTGAATCAGTTGCTTATTGAGTTAGATGGCGCAGAGCAACGGCGAGGTGTTTTTGTGATTGGTGCCACAAATAGGCCTGAGGTGATGGATCGTGCTGTCCTACGGCCTGGTAGGTTTGGTAAACTTCTTTATGTTCCACTTCCAAGCCCACATGAGAGAGTTATGATATTGAAGGCTCTTGCAAGGAAGAAGTCTGTTGATGCCTCTGTGGATTTGAGTGCCATAGGAAAAATGGAAGCTTGTGAAAATCTAAGTGGCGCTGATCTTGCTGCATTGATGAATGAAGCAGCAATGGCTGCTCTTGATGAGAAATTGACCTTGACCGAGACAACTTGTGATACATGGACCATCAAGAGAAATCATTTTGAGGTAGCACTGAGTAAAGTCTCTCCGTCTGTATCAGACAGGCAAAAGCAGTACTATCAGCACTTGTCAGAGAGCTTTAAAGCAGCATGA 2367 0.458 MGRRNGGRSLQETLRRRLDSCKSRFSTAEEIANHLRSTYPDYHRTKYQTLIRFVQEALYSTAKLNHTPTPKHCDDDDDDEGDARSASQKRRKKIDESEERLQRIEALHVRRRVQSDPSTSSASESDNEDGEETVSTSEDAIYEEKVEPEFDLMRAMLRKSYTPKKVAAAEEKNIELEVGNSSKGTTSALSNVERKEVRGSVSNGEVKGEDGPRFRDLGGMKEVLEELKMEVIVPLYHPQLPRQLGVRPMAGILLHGPPGCGKTKLAHAIANETGLPFYQISATEVVSGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTCMDQSNRLLQPADDSESSDDHHPGYVLVIGATNRPDAVDPALRRPGRFDREIVIGIPDESAREEILSVLTCNLRLEGLFDLRKIARATPGFVGADIAALVNKAGNLAMKRIIDERKRELSQDLMGEPAEDWWREPWLPEEIDKLAIKMSDFEEAVKVVQPSSRREGFSSIPNVKWEDVGGLDLLRQEFERYIVRRIKYPEDYERLGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFGRARICAPCILFFDEVDALTTKRGKEGGWVIERLLNQLLIELDGAEQRRGVFVIGATNRPEVMDRAVLRPGRFGKLLYVPLPSPHERVMILKALARKKSVDASVDLSAIGKMEACENLSGADLAALMNEAAMAALDEKLTLTETTCDTWTIKRNHFEVALSKVSPSVSDRQKQYYQHLSESFKAA 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0079 788 Gene3D - 512 778 IPR027417 -
Ssu1g0079 788 PANTHER AAA-FAMILY ATPASE 62 784 - -
Ssu1g0079 788 Gene3D - 685 764 - -
Ssu1g0079 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 505 IPR027417 -
Ssu1g0079 788 MobiDBLite consensus disorder prediction 198 214 - -
Ssu1g0079 788 MobiDBLite consensus disorder prediction 195 214 - -
Ssu1g0079 788 Gene3D - 398 506 - -
Ssu1g0079 788 ProSitePatterns AAA-protein family signature. 367 385 IPR003960 GO:0005524|GO:0016887
Ssu1g0079 788 Pfam ATPase family associated with various cellular activities (AAA) 555 683 IPR003959 GO:0005524|GO:0016887
Ssu1g0079 788 Pfam ATPase family associated with various cellular activities (AAA) 252 396 IPR003959 GO:0005524|GO:0016887
Ssu1g0079 788 Coils Coil 87 107 - -
Ssu1g0079 788 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 62 784 - -
Ssu1g0079 788 ProSitePatterns AAA-protein family signature. 654 672 IPR003960 GO:0005524|GO:0016887
Ssu1g0079 788 MobiDBLite consensus disorder prediction 68 112 - -
Ssu1g0079 788 SMART AAA_5 550 686 IPR003593 -
Ssu1g0079 788 SMART AAA_5 248 399 IPR003593 -
Ssu1g0079 788 MobiDBLite consensus disorder prediction 65 145 - -
Ssu1g0079 788 Pfam AAA+ lid domain 706 744 IPR041569 -
Ssu1g0079 788 Pfam AAA+ lid domain 420 455 IPR041569 -
Ssu1g0079 788 CDD AAA 553 684 - -
Ssu1g0079 788 CDD AAA 247 396 - -
Ssu1g0079 788 Gene3D - 200 397 IPR027417 -
Ssu1g0079 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 512 785 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0079 Ssu-Chr1 2886283 2895903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0079 485 786 Calmodulin-binding Proteins AT3G56690 43.421 3.88e-70 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0079 K14571 - gmx:100809594 1341.64