Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0057 ATGTCTCTGACAGGCCGTCCTCGTATTGTTGTGAACGGGGTTCGAAGAACGCGAACTTTTCACTATTTCTGGTGCCTATATTGCCAGCGAACAGTGAGGATACCCTTTACAAACAATGATGGCTCTTTGTGCCCTTACTGCTTCCACCAATTGCGTTATGAGCTTGATATCTCAAGGCCAAGGCTTCTCACGAACGTGCCAAATAACTTGGAGCCTTCACCTGCTGCTCAGCTGATGCATAGCTTGGCTCTCATTCTTGATCCACCTCTAAGGAGGCAAAACAACCATTTGAACACAACCACACAATGGGAAACAGAAAATGAAGATGGTTCAAATCCTCAGGCTTGGATTACACTCCGATTTGTGAGGCCAACTCATCCACCTAGGCCTATATCCCCACCAGAAAACTTGGTTCCCCACATCAATGACAACCTTTTTGAGAATACACTATTAGATGACTTCATTGATGGGGTGATTCAGAACAACAATAGACCAGGGCCACCTCCAGCAACATCTTCAGCCATTGCAGCATTGCCAATGGTGAAACTTACACAAGCCCATTTGGCAAGTGACCCCAATTGCCCGATTTGCAAAGATGAGTTTCAGCTTGATATGGAAGCGAGAGAGTTGCCATGCAAGCATTTCTACCATTCTGACTGCATCGTCCCTTGGCTGTGCATGCACAACACTTGCCCTGTGTGCCGCTATGAGCTACAAGGTGTTTCTAGTGCTAATGACGCTAATTATTACCGTTTCCAAAATGAGAATGATCTGAGGCTTGGGTTTGAGGATGTTGCAAGCAGCTTGAACTGGATTTGGAACCAACTGGCTTCGTTCAGGCCTATCCGTTCAGTCCTAGATTGGACACGGTCCCACTTTGATTTCCAAGAAAATCATGTTCGTGGTCGTAGAGGTATCTCTTGGTGGCGAGCATTGTTCGTTACATAA 948 0.462 MSLTGRPRIVVNGVRRTRTFHYFWCLYCQRTVRIPFTNNDGSLCPYCFHQLRYELDISRPRLLTNVPNNLEPSPAAQLMHSLALILDPPLRRQNNHLNTTTQWETENEDGSNPQAWITLRFVRPTHPPRPISPPENLVPHINDNLFENTLLDDFIDGVIQNNNRPGPPPATSSAIAALPMVKLTQAHLASDPNCPICKDEFQLDMEARELPCKHFYHSDCIVPWLCMHNTCPVCRYELQGVSSANDANYYRFQNENDLRLGFEDVASSLNWIWNQLASFRPIRSVLDWTRSHFDFQENHVRGRRGISWWRALFVT 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0057 315 SMART ring_2 194 234 IPR001841 -
Ssu1g0057 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 21 309 - -
Ssu1g0057 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 241 IPR013083 -
Ssu1g0057 315 Pfam Ring finger domain 193 235 IPR001841 -
Ssu1g0057 315 CDD RING-H2_RNF126_like 194 235 - -
Ssu1g0057 315 SUPERFAMILY RING/U-box 175 240 - -
Ssu1g0057 315 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Ssu1g0057 315 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 21 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0057 Ssu-Chr1 2038197 2039326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0057 1 296 C3H Transcription Factor Family AT1G68180 32.776 1.23e-43 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0057 K11982 - gmx:100793656 513.457