Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0053 ATGGGGAAAAATGAGCAACAACAACATGTGCAAGAAGAAGGGCAGGGTGGTGGGAGTGAGATGGAGGGTCCACCCTGTTGGTTCCTTCTTCGAGCATTCAGTTTCAAGTGTCTATTCCTTCTCCTCCTCAGCTTGTCGGCTTTGGTTTCTGCACTCTTTTGGGTTCTTCCTAGACACACCACCACATATAGCTTTGATGCAAAAGATGTAATTAAGCAAAGTGcTTCTGTTCAGACATCCTTCAGACTGGAAAAACCAGTTTCACAGCTTATTCCCTATATTGAAACATTAGAATATGATATATATGGCGAAATAGCCCTACCAAATACAAAGGTGGCTATCCTGTCCATGCACCAAAGTATTACACCTAACTGTACTGACGTGGTGTTTGGTGTTCTCTCTGATCCAATGAATGCTTCAATAAATCCAGTGTCCTTGAGTGTGCTGAGGTCATCTTTAATTGAACTGTTTCTCCAGCAATCCAACCTGACTTTGACAACATCAATATTTGGGAATGCATCAATATTTGAGATGTTGAAGTTTCCTGGAGGGATAACTGTAATACCCGTGCAGTCGGCTTCTATTTGGCAGATACCTGagattctgtttaattttaccCTTAACAATTCAATATCTGAAGTATTGGATAATTTTGATGACTTCAAGGATGAATTGAAGTTTGGATTGCATCTAAACTCTGACGAGAATGTGTATGTGCAAATAACAAATGCAAATGGCTCAACGATAGCTCCTCCAGTAGTGGTGCAGGCTTCAGTCATGCCAGGCTTTGGGAGCCTCTTGCCCCAAAGATTAAAGCAATTAGCTCAAACAATAACAGGCTCTGCTGGCAAAAATCTTGGCCTGGATAACTCAGTTTTTGGCAGAGTTAAAGAAGTCAGATTATCTTCTTTCTTGAAGAATACACTACATGCTACCTCACCTTCTCCTTCTCCTGCTCCATCCCCACAGTTAATTGATCACTCTGAGCCATCAACTTCACCACATGCTCGTCCTCACTCTCCAATATCACCGGCAACTGCTGAGCAACCTCCTTGTTTTAACTGTGAAGTATCCTCACCTGCACCTTCTATTGTGCCTGAGCATCCTCCAGATCCCTGTCCATATAATGGCTTCGTACATCATCCAATCCCTTCTCCAAAATCTTATTCTAAACCATCCTTTCCCCCTGATTATCCACCAGCTGCTGCCCCTTCCACAAATTCTGCCAGCCACACTACTGAGGAAGCTTCTGATCTGTCACGTGTAGCCAAGGTGTCCCATGGATCCAAGCTTCGGCAGGGTGAAGAGACATCTAAAAAATTGGTTTCTCAGATACTTGCTCCATCCTCTTTATCTTCAGCGGGTGGTGATTTCCGTAGGGAAATCTTGCTAATGGGATTTTGTAtgctattaatttcttttgtttttctcaatGATACCACATTTTGA 1449 0.4182 MGKNEQQQHVQEEGQGGGSEMEGPPCWFLLRAFSFKCLFLLLLSLSALVSALFWVLPRHTTTYSFDAKDVIKQSASVQTSFRLEKPVSQLIPYIETLEYDIYGEIALPNTKVAILSMHQSITPNCTDVVFGVLSDPMNASINPVSLSVLRSSLIELFLQQSNLTLTTSIFGNASIFEMLKFPGGITVIPVQSASIWQIPEILFNFTLNNSISEVLDNFDDFKDELKFGLHLNSDENVYVQITNANGSTIAPPVVVQASVMPGFGSLLPQRLKQLAQTITGSAGKNLGLDNSVFGRVKEVRLSSFLKNTLHATSPSPSPAPSPQLIDHSEPSTSPHARPHSPISPATAEQPPCFNCEVSSPAPSIVPEHPPDPCPYNGFVHHPIPSPKSYSKPSFPPDYPPAAAPSTNSASHTTEEASDLSRVAKVSHGSKLRQGEETSKKLVSQILAPSSLSSAGGDFRREILLMGFCMLLISFVFLNDTTF 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0053 482 MobiDBLite consensus disorder prediction 386 418 - -
Ssu1g0053 482 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g0053 482 PANTHER F20B24.21 1 475 - -
Ssu1g0053 482 MobiDBLite consensus disorder prediction 388 402 - -
Ssu1g0053 482 MobiDBLite consensus disorder prediction 324 339 - -
Ssu1g0053 482 MobiDBLite consensus disorder prediction 309 354 - -
Ssu1g0053 482 PANTHER F20B24.21 1 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0053 Ssu-Chr1 2017655 2023131 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0053 1 307 C3H Transcription Factor Family AT3G10810 42.271 4.58e-58 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0053 - - ccaj:109803451 764.992