Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0049 ATGGCTCAGGGAAGAGGTATTAGTGCAATAATGCTACTATTCTGTATGTTGGTGCTTTACTCTGAGATGGCTCATGCAAAAACCTATGTGGTTGGGGATGCAGCTGGTTGGACCTTTAACATGACTGCTTGGCCTCACGGAAAGCTTATTATGGCTGATGATATACTCGTATTCAACTATAATTCTTCGAATCACAACGTGGTGATAGTGGACGCGGCTGGATACAGTTCATGCAGTGCTTCAACAAGATCAAAAACGTATCAGTCAGGACATGATCACATCCAGATTGTCCGAGGATCAAGCTACTTTATTTGCACTTTTCCCGGTCACTGCCAGGCTGGGATGAAAATTGCAATTAATGCTGTATAA 369 0.4309 MAQGRGISAIMLLFCMLVLYSEMAHAKTYVVGDAAGWTFNMTAWPHGKLIMADDILVFNYNSSNHNVVIVDAAGYSSCSASTRSKTYQSGHDHIQIVRGSSYFICTFPGHCQAGMKIAINAV 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0049 122 ProSitePatterns Type-1 copper (blue) proteins signature. 99 115 IPR028871 -
Ssu1g0049 122 PANTHER BLUE COPPER PROTEIN 8 120 IPR039391 GO:0009055
Ssu1g0049 122 Pfam Plastocyanin-like domain 37 115 IPR003245 GO:0009055
Ssu1g0049 122 SUPERFAMILY Cupredoxins 28 121 IPR008972 -
Ssu1g0049 122 PANTHER BASIC BLUE-LIKE PROTEIN 8 120 - -
Ssu1g0049 122 Gene3D - 25 122 IPR008972 -
Ssu1g0049 122 CDD Plantacyanin 28 121 IPR041844 -
Ssu1g0049 122 ProSiteProfiles Phytocyanin domain profile. 27 122 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0049 Ssu-Chr1 1966318 1966959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0049 7 122 Phytocyanin Superfamily AT1G17800 37.705 4.31e-22 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0049 - - mus:104000725 155.992