Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0048 ATGGCACAGGGAAGAGGCATTAGTGCAATAATGCTACTATTTTGTATGTTGGTGCTTTACTCTGAGATAGCTCATGCAAAAACCTATGTGGTTGGAGGTCGAGCTGGTTGGACCTCCAACATGACTACTTGGCATGAAAAGAATTTTAGGGCGGGTGATACATTATTATTCATCTATAATTCTTCGCAGCACAACGTGGTGAAAGTGGACGAGGCTGGATACAATTCATGCAGTGCTTCAACAGGATCAAAAACGTATCAATCAGGACATGATTTCATCCAGCTTGACCCGGGATCGAGCTACTTCATTTGCACTTTTCCTGGTCAATGCGAGGCTGGGATGAAATTCGCAGTTATTGCTACATGA 366 0.4344 MAQGRGISAIMLLFCMLVLYSEIAHAKTYVVGGRAGWTSNMTTWHEKNFRAGDTLLFIYNSSQHNVVKVDEAGYNSCSASTGSKTYQSGHDFIQLDPGSSYFICTFPGQCEAGMKFAVIAT 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0048 121 ProSiteProfiles Phytocyanin domain profile. 27 121 IPR003245 GO:0009055
Ssu1g0048 121 SUPERFAMILY Cupredoxins 28 120 IPR008972 -
Ssu1g0048 121 Gene3D - 25 121 IPR008972 -
Ssu1g0048 121 PANTHER BLUE COPPER PROTEIN 8 119 IPR039391 GO:0009055
Ssu1g0048 121 CDD Plantacyanin 28 120 IPR041844 -
Ssu1g0048 121 Pfam Plastocyanin-like domain 38 114 IPR003245 GO:0009055
Ssu1g0048 121 PANTHER BASIC BLUE-LIKE PROTEIN 8 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0048 Ssu-Chr1 1960648 1961210 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0048 7 120 Phytocyanin Superfamily AT1G17800 40.496 1.05e-22 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0048 - - mus:103987231 139.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0048 1 1960648 1961210 Ssu5g2606 5 70721647 70722571 PCT